testgC {ccems} | R Documentation |
This function runs lsoda
using the compiled C code of
the total concentration constraint (TCC)
system equations that should have been created by mkg
.
testgC(g)
g |
The output of mkg . Since mkg already calls this function, it has no independent use. |
Components of g
used by this function are:
g$parmsTCC
which includes the total concentrations, the fraction of active protein p, and the spur graph complete dissociation
constant parameter values Kj; and the lsoda
ODE integration
tolerance parameters g$rtol
and g$atol
.
No value returned. Ten time points are printed to the screen. The free concentrations should show signs of convergence toward a steady state.
Tom Radivoyevitch
library(ccems) topology <- list( heads=c("R1t0","R2t0"), sites=list( s=list( # s-site thread # m=c("R1t1"), # monomer 1 d=c("R2t1","R2t2") # dimer 2 ) ) ) g=mkg(topology,TCC=TRUE) testgC(g) # this checks the compiled code again (it was already called in mkg)