Retrieve Affymetrix microarray measurements and metadata from Celsius


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Documentation for package ‘celsius’ version 1.0.7

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celsius-package Retrieve Affymetrix microarray measurements and metadata from Celsius
celsius Retrieve Affymetrix microarray measurements and metadata from Celsius
celsiusServer Object to hold values pertaining to a Celsius Server
celsiusServer-class Object to hold values pertaining to a Celsius Server
getAssayData Get Celsius data using IDs, probesets OR the intersection of data that corresponds to BOTH IDs and probesets.
getCvterms Retrieve ontology term (aka CV term) data structures (lists) by query phrase
getFeatureData Retrieve data (probeset-wise) into R from Celsius webserver
getOntologyData Retrieve Annotations into R from Celsius webserver
getPhenoData Retrieve a matrix of annotations from controlled vocabulary terms
getPlatformData lists all the platforms available on a Celsius server
getSampleData Retrieve data (sample-wise) into R from Celsius webserver
listSamplesForPlatform Lists all the internal IDs for a given platform
makeExprSet Retrieve data and or phenotype annotations from Celsius and package into a BIOC expression set object
mapIdToCelsius Expands vector of SN or external identifiers to one of SN identifiers