celsius-package |
Retrieve Affymetrix microarray measurements and metadata from Celsius |
celsius |
Retrieve Affymetrix microarray measurements and metadata from Celsius |
celsiusServer |
Object to hold values pertaining to a Celsius Server |
celsiusServer-class |
Object to hold values pertaining to a Celsius Server |
getAssayData |
Get Celsius data using IDs, probesets OR the intersection of data that corresponds to BOTH IDs and probesets. |
getCvterms |
Retrieve ontology term (aka CV term) data structures (lists) by query phrase |
getFeatureData |
Retrieve data (probeset-wise) into R from Celsius webserver |
getOntologyData |
Retrieve Annotations into R from Celsius webserver |
getPhenoData |
Retrieve a matrix of annotations from controlled vocabulary terms |
getPlatformData |
lists all the platforms available on a Celsius server |
getSampleData |
Retrieve data (sample-wise) into R from Celsius webserver |
listSamplesForPlatform |
Lists all the internal IDs for a given platform |
makeExprSet |
Retrieve data and or phenotype annotations from Celsius and package into a BIOC expression set object |
mapIdToCelsius |
Expands vector of SN or external identifiers to one of SN identifiers |