plot.sota {clValid} | R Documentation |
'plot.sota' is used to obtain a visual representation of profiles within each individual cluster. Corresponding cluster average profiles are also available. By default, plots for all clusters are displayed side by side.
## S3 method for class 'sota': plot(x, cl = 0, ...)
x |
SOTA object, an object returned by function sota . |
cl |
cl specifies which cluster is to be plotted by setting it to the cluster ID. By default,
cl is equal to 0 and the function plots all clusters side by
side. |
... |
Additional arguments to pass to plot . |
Vasyl Pihur, Guy Brock, Susmita Datta, Somnath Datta
Herrero, J., Valencia, A, and Dopazo, J. (2005). A hierarchical unsupervised growing neural network for clustering gene expression patterns. Bioinformatics, 17, 126-136.
data(mouse) express <- mouse[,c("M1","M2","M3","NC1","NC2","NC3")] rownames(express) <- mouse$ID sotaCl <- sota(as.matrix(express), 4) names(sotaCl) sotaCl plot(sotaCl) plot(sotaCl, cl=2)