crosshyb2xls.putative {crosshybDetector}R Documentation

Writing list of analyzed probes to file

Description

Writes the lists of probes processed by crosshyb to files. Those files are only used for tracking purposes and contain the ASCII representation of crosshyb output.

Usage

crosshyb2xls.putative(input, arrayName)

Arguments

input The output of crosshyb
arrayName The name of the array. Used to create the output file name

Value

This function writes a tab-delimited files for each channel of a dual channel microarray experiment into the current directory

Author(s)

Paolo Uva

See Also

crosshyb, crosshybMCplot

Examples

## Not run: 
# Run crosshyb algorithm...
# This function will take several minutes to finish
data(raw)
data(probeSeq)
crosshyb.out <- crosshyb(raw, probeSeq, plate=1, numPermut=10000,
                         probeNameID="Name", probes=c("probes", "spike"),
                         satValue = 65535, maxProbes=100)                      

# ... or load directly the crosshyb output
data(crosshyb.out)

# Write probes analyzed by crosshyb to files
crosshyb2xls.putative(crosshyb.out, arrayName="myArray")
## End(Not run)

[Package crosshybDetector version 1.0.4 Index]