Dependent Mixture Models


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Documentation for package ‘depmixS4’ version 0.2-1

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A B D F G L M N P R S T

-- --

depmixS4-package depmixS4 provides classes for specifying and fitting hidden Markov models

-- A --

AIC Compute AIC and BIC for (dep-)mix objects
AIC,depmix-method Compute AIC and BIC for (dep-)mix objects
AIC,mix-method Compute AIC and BIC for (dep-)mix objects

-- B --

balance Balance Scale Data
BIC Compute AIC and BIC for (dep-)mix objects
BIC,depmix-method Compute AIC and BIC for (dep-)mix objects
BIC,mix-method Compute AIC and BIC for (dep-)mix objects
BINOMresponse Response models currently implemented in depmix.

-- D --

depmix Dependent Mixture Model Specifiction
depmix,ANY-method Dependent Mixture Model Specifiction
depmix-class Class "depmix"
depmix-methods 'depmix' and 'mix' methods.
depmix.fit Fit 'depmix' or 'mix' models
depmix.fitted Class "depmix.fitted"
depmix.fitted-class Class "depmix.fitted"
depmix.sim Class "depmix.sim"
depmix.sim-class Class "depmix.sim"
depmixS4 depmixS4 provides classes for specifying and fitting hidden Markov models

-- F --

fit Fit 'depmix' or 'mix' models
fit,depmix-method Fit 'depmix' or 'mix' models
fit,mix-method Fit 'depmix' or 'mix' models
forwardbackward Forward and backward variables
forwardbackward,depmix-method Forward and backward variables
freepars 'depmix' and 'mix' methods.
freepars,depmix-method 'depmix' and 'mix' methods.
freepars,depmix.fitted-method 'depmix' and 'mix' methods.
freepars,mix-method 'depmix' and 'mix' methods.
freepars,mix.fitted-method 'depmix' and 'mix' methods.

-- G --

GAMMAresponse Response models currently implemented in depmix.
getdf Methods for creating depmix response models
getdf,response-method Methods for creating depmix response models
getpars 'depmix' and 'mix' methods.
getpars,depmix-method 'depmix' and 'mix' methods.
getpars,mix-method 'depmix' and 'mix' methods.
GLMresponse Methods for creating depmix response models
GLMresponse,formula-method Methods for creating depmix response models
GLMresponse-class Class "GLMresponse" and class "transInit"

-- L --

llratio Log likelihood ratio test on two fitted models
logLik 'depmix' and 'mix' methods.
logLik,depmix-method 'depmix' and 'mix' methods.
logLik,mix-method 'depmix' and 'mix' methods.
loglikelihoodratio Log likelihood ratio test on two fitted models

-- M --

makeDepmix Dependent Mixture Model Specifiction: the long way
mix Mixture Model Specifiction
mix,ANY-method Mixture Model Specifiction
mix-class Class "mix"
mix.fit Fit 'depmix' or 'mix' models
mix.fitted-class Class "mix.fitted"
mix.sim Class "mix.sim"
mix.sim-class Class "mix.sim"
MULTINOMresponse Response models currently implemented in depmix.
MVNresponse Response models currently implemented in depmix.
MVNresponse-class Class "GLMresponse" and class "transInit"

-- N --

nobs 'depmix' and 'mix' methods.
nobs,depmix-method 'depmix' and 'mix' methods.
nobs,mix-method 'depmix' and 'mix' methods.
NORMresponse Response models currently implemented in depmix.
npar 'depmix' and 'mix' methods.
npar,depmix-method 'depmix' and 'mix' methods.
npar,mix-method 'depmix' and 'mix' methods.
nresp Class "depmix"
nresp,depmix-method Class "depmix"
nresp,depmix.sim-method Class "depmix.sim"
nresp,mix-method Class "mix"
nresp,mix.sim-method Class "mix.sim"
nstates Class "depmix"
nstates,depmix-method Class "depmix"
nstates,depmix.sim-method Class "depmix.sim"
nstates,mix-method Class "mix"
nstates,mix.sim-method Class "mix.sim"
ntimes Class "depmix"
ntimes,depmix-method Class "depmix"
ntimes,depmix.sim-method Class "depmix.sim"
ntimes,mix-method Class "mix"
ntimes,mix.sim-method Class "mix.sim"

-- P --

POISSONresponse Response models currently implemented in depmix.
posterior Posterior states/classes
posterior,depmix.fitted-method Posterior states/classes
posterior,mix.fitted-method Posterior states/classes

-- R --

response Methods for creating depmix response models
response-class Class "response"
response-classes Class "GLMresponse" and class "transInit"
responses Response models currently implemented in depmix.

-- S --

setpars 'depmix' and 'mix' methods.
setpars,depmix-method 'depmix' and 'mix' methods.
setpars,mix-method 'depmix' and 'mix' methods.
show Dependent Mixture Model Specifiction
show,depmix-method Dependent Mixture Model Specifiction
show,depmix.fitted-method Fit 'depmix' or 'mix' models
show,GLMresponse-method Methods for creating depmix response models
show,llratio-method Log likelihood ratio test on two fitted models
show,mix-method Mixture Model Specifiction
show,mix.fitted-method Fit 'depmix' or 'mix' models
show,MVNresponse-method Response models currently implemented in depmix.
simulate Methods to simulate from (dep-)mix models
simulate,BINOMresponse-method Methods to simulate from (dep-)mix models
simulate,depmix-method Methods to simulate from (dep-)mix models
simulate,GAMMAresponse-method Methods to simulate from (dep-)mix models
simulate,GLMresponse-method Methods to simulate from (dep-)mix models
simulate,mix-method Methods to simulate from (dep-)mix models
simulate,MULTINOMresponse-method Methods to simulate from (dep-)mix models
simulate,MVNresponse-method Methods to simulate from (dep-)mix models
simulate,NORMresponse-method Methods to simulate from (dep-)mix models
simulate,POISSONresponse-method Methods to simulate from (dep-)mix models
simulate,response-method Methods to simulate from (dep-)mix models
simulate,transInit-method Methods to simulate from (dep-)mix models
speed Speed Accuracy Switching Data
summary Dependent Mixture Model Specifiction
summary,depmix-method Dependent Mixture Model Specifiction
summary,depmix.fitted-method Fit 'depmix' or 'mix' models
summary,mix-method Mixture Model Specifiction
summary,mix.fitted-method Fit 'depmix' or 'mix' models

-- T --

transInit Methods for creating depmix response models
transInit,formula-method Methods for creating depmix response models
transInit-class Class "GLMresponse" and class "transInit"