Dive analysis and calibration


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Documentation for package ‘diveMove’ version 0.9.5

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A B C D E G L O P R S T U Z misc

-- --

diveMove-package Dive Analysis and Calibration

-- A --

as.data.frame,TDR-method Coerce, Extractor, and Replacement methods for class "TDR" objects
as.TDRspeed Coerce, Extractor, and Replacement methods for class "TDR" objects
as.TDRspeed,TDR-method Coerce, Extractor, and Replacement methods for class "TDR" objects
austFilter Filter satellite locations

-- B --

bec2 Methods for Plotting and Extracting the Bout Ending Criterion
bec2,mle-method Methods for Plotting and Extracting the Bout Ending Criterion
bec2,nls-method Methods for Plotting and Extracting the Bout Ending Criterion
bout-methods Methods for Plotting and Extracting the Bout Ending Criterion
boutfreqs Fit a Broken Stick Model on Log Frequency Data for identification of bouts of behaviour
boutinit Fit a Broken Stick Model on Log Frequency Data for identification of bouts of behaviour
bouts.mle Maximum Likelihood Model of mixture of 2 Poisson Processes
bouts2.LL Maximum Likelihood Model of mixture of 2 Poisson Processes
bouts2.ll Maximum Likelihood Model of mixture of 2 Poisson Processes
bouts2.mleBEC Maximum Likelihood Model of mixture of 2 Poisson Processes
bouts2.mleFUN Maximum Likelihood Model of mixture of 2 Poisson Processes
bouts2.nls Fit mixture of 2 Poisson Processes to Log Frequency data
bouts2.nlsBEC Fit mixture of 2 Poisson Processes to Log Frequency data
bouts2.nlsFUN Fit mixture of 2 Poisson Processes to Log Frequency data

-- C --

calibrateDepth Calibrate Depth and Generate a "TDRcalibrate" object
calibrateSpeed Calibrate and build a "TDRcalibrate" object
ccData<-,TDR,data.frame-method Coerce, Extractor, and Replacement methods for class "TDR" objects
coerce,TDR,data.frame-method Coerce, Extractor, and Replacement methods for class "TDR" objects
coerce,TDR,TDRspeed-method Coerce, Extractor, and Replacement methods for class "TDR" objects
createTDR Read comma-delimited file with "TDR" data

-- D --

depth<-,TDR,numeric-method Coerce, Extractor, and Replacement methods for class "TDR" objects
distSpeed Calculate distance and speed between locations
diveMove Dive Analysis and Calibration
dives Sample of TDR data from a fur seal
divesSummary Sample of TDR data from a fur seal
diveStats Per-dive statistics
divesTDR Sample of TDR data from a fur seal
divesTDRcalibrate Sample of TDR data from a fur seal

-- E --

extractDive Extract Dives from "TDR" or "TDRcalibrate" Objects
extractDive,TDR,numeric,numeric-method Extract Dives from "TDR" or "TDRcalibrate" Objects
extractDive,TDRcalibrate,numeric,missing-method Extract Dives from "TDR" or "TDRcalibrate" Objects
extractDive-methods Extract Dives from "TDR" or "TDRcalibrate" Objects

-- G --

getCCData Coerce, Extractor, and Replacement methods for class "TDR" objects
getCCData,TDR,character-method Coerce, Extractor, and Replacement methods for class "TDR" objects
getCCData,TDR,missing-method Coerce, Extractor, and Replacement methods for class "TDR" objects
getDAct Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getDAct,TDRcalibrate,character-method Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getDAct,TDRcalibrate,missing-method Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getDepth Coerce, Extractor, and Replacement methods for class "TDR" objects
getDepth,TDR-method Coerce, Extractor, and Replacement methods for class "TDR" objects
getDPhaseLab Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getDPhaseLab,TDRcalibrate,missing-method Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getDPhaseLab,TDRcalibrate,numeric-method Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getDtime Coerce, Extractor, and Replacement methods for class "TDR" objects
getDtime,TDR-method Coerce, Extractor, and Replacement methods for class "TDR" objects
getFileName Coerce, Extractor, and Replacement methods for class "TDR" objects
getFileName,TDR-method Coerce, Extractor, and Replacement methods for class "TDR" objects
getGAct Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getGAct,TDRcalibrate,character-method Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getGAct,TDRcalibrate,missing-method Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getSpeed Coerce, Extractor, and Replacement methods for class "TDR" objects
getSpeed,TDRspeed-method Coerce, Extractor, and Replacement methods for class "TDR" objects
getSpeedCoef Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getSpeedCoef,TDRcalibrate-method Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getTDR Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getTDR,TDRcalibrate-method Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getTime Coerce, Extractor, and Replacement methods for class "TDR" objects
getTime,TDR-method Coerce, Extractor, and Replacement methods for class "TDR" objects
grpSpeedFilter Filter satellite locations

-- L --

labelBouts Fit a Broken Stick Model on Log Frequency Data for identification of bouts of behaviour
logit Fit a Broken Stick Model on Log Frequency Data for identification of bouts of behaviour

-- O --

oneDiveStats Per-dive statistics

-- P --

plotBouts Methods for Plotting and Extracting the Bout Ending Criterion
plotBouts,mle-method Methods for Plotting and Extracting the Bout Ending Criterion
plotBouts,nls-method Methods for Plotting and Extracting the Bout Ending Criterion
plotBouts2.cdf Maximum Likelihood Model of mixture of 2 Poisson Processes
plotBouts2.mle Maximum Likelihood Model of mixture of 2 Poisson Processes
plotBouts2.nls Fit mixture of 2 Poisson Processes to Log Frequency data
plotTD Interactive zero-offset correction of "TDR" data
plotTDR Methods for plotting objects of class "TDR", "TDRspeed", and "TDRcalibrate"
plotTDR,TDR-method Methods for plotting objects of class "TDR", "TDRspeed", and "TDRcalibrate"
plotTDR,TDRcalibrate-method Methods for plotting objects of class "TDR", "TDRspeed", and "TDRcalibrate"
plotTDR,TDRspeed-method Methods for plotting objects of class "TDR", "TDRspeed", and "TDRcalibrate"
plotTDR-methods Methods for plotting objects of class "TDR", "TDRspeed", and "TDRcalibrate"

-- R --

readLocs Read comma-delimited file with location data
readTDR Read comma-delimited file with "TDR" data
rmsDistFilter Filter satellite locations
rqPlot Plot of quantile regression for speed calibrations

-- S --

sealLocs Ringed and Gray Seal ARGOS Satellite Location Data
show,TDR-method Coerce, Extractor, and Replacement methods for class "TDR" objects
show,TDRcalibrate-method Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
speed<-,TDRspeed,numeric-method Coerce, Extractor, and Replacement methods for class "TDR" objects
stampDive Per-dive statistics

-- T --

TDR Classes "TDR" and "TDRspeed" for representing TDR information
TDR-accessors Coerce, Extractor, and Replacement methods for class "TDR" objects
TDR-class Classes "TDR" and "TDRspeed" for representing TDR information
TDR-methods Coerce, Extractor, and Replacement methods for class "TDR" objects
TDRcalibrate Class "TDRcalibrate" for dive analysis
TDRcalibrate-accessors Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
TDRcalibrate-class Class "TDRcalibrate" for dive analysis
TDRcalibrate-methods Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
TDRspeed Classes "TDR" and "TDRspeed" for representing TDR information
TDRspeed-class Classes "TDR" and "TDRspeed" for representing TDR information
timeBudget Describe the Time Budget of Major Activities from "TDRcalibrate" object.
timeBudget,TDRcalibrate,logical-method Describe the Time Budget of Major Activities from "TDRcalibrate" object.

-- U --

unLogit Fit a Broken Stick Model on Log Frequency Data for identification of bouts of behaviour

-- Z --

zoc Interactive zero-offset correction of "TDR" data

-- misc --

[,TDR-method Coerce, Extractor, and Replacement methods for class "TDR" objects