pseudo.map {eqtl}R Documentation

The makers and pseudo-markers genetic map

Description

List the markers and pseudo-markers genetic positions for all of the chromosomes.

Usage

pseudo.map( cross )

Arguments

cross An object of class cross. See 'qtl' package manual for read.cross function details.

Details

This function list the markers and pseudo-marker genetic positions for all of the chromosomes. This function is used by others functions.

Value

A vector containing containing the genetic position of markers and pseudo-marker for all of the chromosomes sort by positions and chromosomes appearance.

Note

It is necessary to previously perform the calc.genoprob function.

Author(s)

Hamid A. Khalili

See Also

calc.genoprob

Examples

data(seed10);

# Genotype probabilities
seed10 <- calc.genoprob( cross=seed10, step=2, off.end=0, error.prob=0,
         map.function='kosambi', stepwidth='fixed');

pseudo.map(seed10);

[Package eqtl version 1.0 Index]