The giRaph package for graph representation in R

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Documentation for package ‘giRaph’ version 0.1-1

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A C D E G I M N R S U V misc

*,adjacencyList,vertexSet-method Class "adjacencyList"
*,adjacencyMatrix,vertexSet-method Class "adjacencyMatrix"
*,anyGraph,vertexSet-method Class "anyGraph"
*,generalGraph,vertexSet-method Class "generalGraph"
*,incidenceList,vertexSet-method Class "incidenceList"
*,incidenceMatrix,vertexSet-method Class "incidenceMatrix"
*,multiGraph,vertexSet-method Class "multiGraph"
*,simpleGraph,vertexSet-method Class "simpleGraph"
*,vertexSet,vertexSet-method Class "vertexSet"
+,adjacencyList,directedEdge-method Class "adjacencyList"
+,adjacencyList,undirectedEdge-method Class "adjacencyList"
+,adjacencyList,vertexSet-method Class "adjacencyList"
+,adjacencyMatrix,directedEdge-method Class "adjacencyMatrix"
+,adjacencyMatrix,undirectedEdge-method Class "adjacencyMatrix"
+,adjacencyMatrix,vertexSet-method Class "adjacencyMatrix"
+,anyGraph,edge-method Class "anyGraph"
+,anyGraph,vertexSet-method Class "anyGraph"
+,edge,edgeList-method Class "edgeList"
+,edgeList,edge-method Class "edgeList"
+,generalGraph,edge-method Class "generalGraph"
+,generalGraph,vertexSet-method Class "generalGraph"
+,incidenceList,edge-method Class "incidenceList"
+,incidenceList,vertexSet-method Class "incidenceList"
+,incidenceMatrix,directedEdge-method Class "incidenceMatrix"
+,incidenceMatrix,undirectedEdge-method Class "incidenceMatrix"
+,incidenceMatrix,vertexSet-method Class "incidenceMatrix"
+,multiGraph,edge-method Class "multiGraph"
+,multiGraph,vertexSet-method Class "multiGraph"
+,simpleGraph,directedEdge-method Class "simpleGraph"
+,simpleGraph,undirectedEdge-method Class "simpleGraph"
+,simpleGraph,vertexSet-method Class "simpleGraph"
+,vertexSet,vertexSet-method Class "vertexSet"
-,adjacencyList,directedEdge-method Class "adjacencyList"
-,adjacencyList,undirectedEdge-method Class "adjacencyList"
-,adjacencyList,vertexSet-method Class "adjacencyList"
-,adjacencyMatrix,directedEdge-method Class "adjacencyMatrix"
-,adjacencyMatrix,undirectedEdge-method Class "adjacencyMatrix"
-,adjacencyMatrix,vertexSet-method Class "adjacencyMatrix"
-,anyGraph,edge-method Class "anyGraph"
-,anyGraph,vertexSet-method Class "anyGraph"
-,edgeList,edge-method Class "edgeList"
-,generalGraph,edge-method Class "generalGraph"
-,generalGraph,vertexSet-method Class "generalGraph"
-,incidenceList,edge-method Class "incidenceList"
-,incidenceList,vertexSet-method Class "incidenceList"
-,incidenceMatrix,directedEdge-method Class "incidenceMatrix"
-,incidenceMatrix,undirectedEdge-method Class "incidenceMatrix"
-,incidenceMatrix,vertexSet-method Class "incidenceMatrix"
-,multiGraph,edge-method Class "multiGraph"
-,multiGraph,vertexSet-method Class "multiGraph"
-,simpleGraph,edge-method Class "simpleGraph"
-,simpleGraph,vertexSet-method Class "simpleGraph"
-,vertexSet,vertexSet-method Class "vertexSet"

-- A --

adjacencyList Adjacency list representation of a graph
adjacencyList,multiGraph-method Class "multiGraph"
adjacencyList,simpleGraph-method Class "simpleGraph"
adjacencyList-class Class "adjacencyList"
adjacencyList<-,multiGraph-method Class "multiGraph"
adjacencyList<-,simpleGraph-method Class "simpleGraph"
adjacencyMatrix Adjacency matrix representation of a graph
adjacencyMatrix,simpleGraph-method Class "simpleGraph"
adjacencyMatrix-class Class "adjacencyMatrix"
adjacencyMatrix<-,simpleGraph-method Class "simpleGraph"
anyGraph-class Class "anyGraph"
areTheSame Are they the same mathematical entity?
areTheSame,adjacencyList,adjacencyList-method Class "adjacencyList"
areTheSame,adjacencyMatrix,adjacencyMatrix-method Class "adjacencyMatrix"
areTheSame,anyGraph,anyGraph-method Class "anyGraph"
areTheSame,directedEdge,directedEdge-method Class "directedEdge"
areTheSame,edge,edge-method Virtual Class "edge"
areTheSame,edgeList,edgeList-method Class "edgeList"
areTheSame,generalGraph,generalGraph-method Class "generalGraph"
areTheSame,incidenceList,incidenceList-method Class "incidenceList"
areTheSame,incidenceMatrix,incidenceMatrix-method Class "incidenceMatrix"
areTheSame,multiGraph,multiGraph-method Class "multiGraph"
areTheSame,simpleGraph,simpleGraph-method Class "simpleGraph"
areTheSame,undirectedEdge,undirectedEdge-method Class "undirectedEdge"
areTheSame,vertexSet,vertexSet-method Class "vertexSet"

-- C --

card Get the cardinality of an object
card,adjacencyList-method Class "adjacencyList"
card,adjacencyMatrix-method Class "adjacencyMatrix"
card,anyGraph-method Class "anyGraph"
card,directedEdge-method Class "directedEdge"
card,generalGraph-method Class "generalGraph"
card,incidenceList-method Class "incidenceList"
card,incidenceMatrix-method Class "incidenceMatrix"
card,multiGraph-method Class "multiGraph"
card,simpleGraph-method Class "simpleGraph"
card,vector-method Get the cardinality of an object
coerce,adjacencyList,adjacencyMatrix-method Class "adjacencyMatrix"
coerce,adjacencyList,incidenceList-method Class "incidenceList"
coerce,adjacencyList,incidenceMatrix-method Class "incidenceMatrix"
coerce,adjacencyMatrix,adjacencyList-method Class "adjacencyList"
coerce,adjacencyMatrix,incidenceList-method Class "incidenceList"
coerce,adjacencyMatrix,incidenceMatrix-method Class "incidenceMatrix"
coerce,anyGraph,dg.graph-method Class "anyGraph"
coerce,anyGraph,generalGraph-method Class "generalGraph"
coerce,anyGraph,multiGraph-method Class "multiGraph"
coerce,anyGraph,simpleGraph-method Class "simpleGraph"
coerce,directedEdge,undirectedEdge-method Class "undirectedEdge"
coerce,generalGraph,anyGraph-method Class "anyGraph"
coerce,generalGraph,dg.graph-method Class "generalGraph"
coerce,generalGraph,multiGraph-method Class "multiGraph"
coerce,generalGraph,simpleGraph-method Class "simpleGraph"
coerce,incidenceList,adjacencyList-method Class "adjacencyList"
coerce,incidenceList,adjacencyMatrix-method Class "adjacencyMatrix"
coerce,incidenceList,incidenceMatrix-method Class "incidenceMatrix"
coerce,incidenceMatrix,adjacencyList-method Class "adjacencyList"
coerce,incidenceMatrix,adjacencyMatrix-method Class "adjacencyMatrix"
coerce,incidenceMatrix,incidenceList-method Class "incidenceList"
coerce,list,edgeList-method Class "edgeList"
coerce,mathgraph,simpleGraph-method Class "simpleGraph"
coerce,multiGraph,anyGraph-method Class "anyGraph"
coerce,multiGraph,dg.graph-method Class "multiGraph"
coerce,multiGraph,dg.simple.graph-method Class "multiGraph"
coerce,multiGraph,generalGraph-method Class "generalGraph"
coerce,multiGraph,simpleGraph-method Class "simpleGraph"
coerce,simpleGraph,anyGraph-method Class "anyGraph"
coerce,simpleGraph,dg.graph-method Class "simpleGraph"
coerce,simpleGraph,dg.simple.graph-method Class "simpleGraph"
coerce,simpleGraph,generalGraph-method Class "generalGraph"
coerce,simpleGraph,mathgraph-method Class "simpleGraph"
coerce,simpleGraph,multiGraph-method Class "multiGraph"
coerce,undirectedEdge,directedEdge-method Class "directedEdge"
coerce,vector,directedEdge-method Class "directedEdge"
coerce,vector,undirectedEdge-method Class "undirectedEdge"
coerce,vector,vertexSet-method Class "vertexSet"

-- D --

d Short-hands for vertex set and edge construction
directedEdge-class Class "directedEdge"
display Make a display of the graph using the graphics window
display,anyGraph-method Class "anyGraph"
display,generalGraph-method Class "generalGraph"
display,multiGraph-method Class "multiGraph"
display,simpleGraph-method Class "simpleGraph"
dynamic.Graph DynamicGraph display of simple graph
dynamic.Graph,anyGraph-method Class "anyGraph"
dynamic.Graph,generalGraph-method Class "generalGraph"
dynamic.Graph,multiGraph-method Class "multiGraph"
dynamic.Graph,simpleGraph-method Class "simpleGraph"

-- E --

edge-class Virtual Class "edge"
edgeList-class Class "edgeList"

-- G --

generalGraph-class Class "generalGraph"
giRaph The package ‘giRaph’: summary information

-- I --

incidenceList Incidence list representation of a graph
incidenceList,anyGraph-method Class "anyGraph"
incidenceList,generalGraph-method Class "generalGraph"
incidenceList,multiGraph-method Class "multiGraph"
incidenceList,simpleGraph-method Class "simpleGraph"
incidenceList-class Class "incidenceList"
incidenceList<-,anyGraph-method Class "anyGraph"
incidenceList<-,generalGraph-method Class "generalGraph"
incidenceList<-,multiGraph-method Class "multiGraph"
incidenceList<-,simpleGraph-method Class "simpleGraph"
incidenceMatrix Incidence matrix representation of a graph
incidenceMatrix,generalGraph-method Class "generalGraph"
incidenceMatrix,multiGraph-method Class "multiGraph"
incidenceMatrix,simpleGraph-method Class "simpleGraph"
incidenceMatrix-class Class "incidenceMatrix"
incidenceMatrix<-,generalGraph-method Class "generalGraph"
incidenceMatrix<-,multiGraph-method Class "multiGraph"
incidenceMatrix<-,simpleGraph-method Class "simpleGraph"
initialize,adjacencyList-method Class "adjacencyList"
initialize,adjacencyMatrix-method Class "adjacencyMatrix"
initialize,anyGraph-method Class "anyGraph"
initialize,directedEdge-method Class "directedEdge"
initialize,edgeList-method Class "edgeList"
initialize,generalGraph-method Class "generalGraph"
initialize,incidenceList-method Class "incidenceList"
initialize,incidenceMatrix-method Class "incidenceMatrix"
initialize,multiGraph-method Class "multiGraph"
initialize,simpleGraph-method Class "simpleGraph"
initialize,undirectedEdge-method Class "undirectedEdge"
initialize,vertexSet-method Class "vertexSet"
isEmpty Is the object empty?
isEmpty,adjacencyList-method Class "adjacencyList"
isEmpty,adjacencyMatrix-method Class "adjacencyMatrix"
isEmpty,anyGraph-method Class "anyGraph"
isEmpty,generalGraph-method Class "generalGraph"
isEmpty,incidenceList-method Class "incidenceList"
isEmpty,incidenceMatrix-method Class "incidenceMatrix"
isEmpty,multiGraph-method Class "multiGraph"
isEmpty,NULL-method Is the object empty?
isEmpty,simpleGraph-method Class "simpleGraph"
isEmpty,vector-method Is the object empty?
isPresent Is the first object present in the second one?
isPresent,directedEdge,adjacencyList-method Class "adjacencyList"
isPresent,directedEdge,adjacencyMatrix-method Class "adjacencyMatrix"
isPresent,directedEdge,incidenceMatrix-method Class "incidenceMatrix"
isPresent,edge,anyGraph-method Class "anyGraph"
isPresent,edge,edgeList-method Class "edgeList"
isPresent,edge,generalGraph-method Class "generalGraph"
isPresent,edge,incidenceList-method Class "incidenceList"
isPresent,edge,multiGraph-method Class "multiGraph"
isPresent,edge,simpleGraph-method Class "simpleGraph"
isPresent,undirectedEdge,adjacencyList-method Class "adjacencyList"
isPresent,undirectedEdge,adjacencyMatrix-method Class "adjacencyMatrix"
isPresent,undirectedEdge,incidenceMatrix-method Class "incidenceMatrix"

-- M --

maxId Get the maximum numeric identifier of an object
maxId,directedEdge-method Class "directedEdge"
maxId,edgeList-method Class "edgeList"
maxId,undirectedEdge-method Class "undirectedEdge"
multiGraph-class Class "multiGraph"

-- N --

names,adjacencyList-method Class "adjacencyList"
names,adjacencyMatrix-method Class "adjacencyMatrix"
names,anyGraph-method Class "anyGraph"
names,generalGraph-method Class "generalGraph"
names,incidenceList-method Class "incidenceList"
names,incidenceMatrix-method Class "incidenceMatrix"
names,multiGraph-method Class "multiGraph"
names,simpleGraph-method Class "simpleGraph"
names,vertexSet-method Class "vertexSet"
names<-,adjacencyList-method Class "adjacencyList"
names<-,adjacencyMatrix-method Class "adjacencyMatrix"
names<-,anyGraph-method Class "anyGraph"
names<-,generalGraph-method Class "generalGraph"
names<-,incidenceList-method Class "incidenceList"
names<-,incidenceMatrix-method Class "incidenceMatrix"
names<-,multiGraph-method Class "multiGraph"
names<-,simpleGraph-method Class "simpleGraph"

-- R --

r Short-hands for vertex set and edge construction
recode Function to recode an object from a given source code to a given target code
recode,directedEdge,vertexSet,vertexSet-method Class "directedEdge"
recode,edgeList,vertexSet,vertexSet-method Class "edgeList"
recode,undirectedEdge,vertexSet,vertexSet-method Class "undirectedEdge"

-- S --

show,adjacencyList-method Class "adjacencyList"
show,adjacencyMatrix-method Class "adjacencyMatrix"
show,anyGraph-method Class "anyGraph"
show,directedEdge-method Class "directedEdge"
show,edgeList-method Class "edgeList"
show,generalGraph-method Class "generalGraph"
show,incidenceList-method Class "incidenceList"
show,incidenceMatrix-method Class "incidenceMatrix"
show,multiGraph-method Class "multiGraph"
show,simpleGraph-method Class "simpleGraph"
show,undirectedEdge-method Class "undirectedEdge"
show,vertexSet-method Class "vertexSet"
showRel Function to show an object relative to a given code
showRel,directedEdge,vertexSet-method Class "directedEdge"
showRel,edgeList,vertexSet-method Class "edgeList"
showRel,undirectedEdge,vertexSet-method Class "undirectedEdge"
simpleGraph-class Class "simpleGraph"

-- U --

u Short-hands for vertex set and edge construction
undirectedEdge-class Class "undirectedEdge"

-- V --

v Short-hands for vertex set and edge construction
vertexSet-class Class "vertexSet"

-- misc --

[,adjacencyList-method Class "adjacencyList"
[,adjacencyMatrix-method Class "adjacencyMatrix"
[,anyGraph-method Class "anyGraph"
[,directedEdge-method Class "directedEdge"
[,edgeList-method Class "edgeList"
[,generalGraph-method Class "generalGraph"
[,incidenceList-method Class "incidenceList"
[,incidenceMatrix-method Class "incidenceMatrix"
[,multiGraph-method Class "multiGraph"
[,simpleGraph-method Class "simpleGraph"
[,undirectedEdge-method Class "undirectedEdge"
[,vertexSet-method Class "vertexSet"
[[,adjacencyList-method Class "adjacencyList"
[[,adjacencyMatrix-method Class "adjacencyMatrix"
[[,anyGraph-method Class "anyGraph"
[[,directedEdge-method Class "directedEdge"
[[,generalGraph-method Class "generalGraph"
[[,incidenceList-method Class "incidenceList"
[[,incidenceMatrix-method Class "incidenceMatrix"
[[,multiGraph-method Class "multiGraph"
[[,simpleGraph-method Class "simpleGraph"