Generalised Linear Mixed Models and Spatial Models with BUGS


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Documentation for package ‘glmmBUGS’ version 1.5

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addSpatial Calculate adjacency values for WinBUGS
binToBinom Convert Bernoulli observations to Binomial
checkChain Plot an MCMC run
cholInvArray Precision matrices to variance matrices for Winbugs output
getDesignMatrix Computes a design matrix from factors and interactions
getRaggedSeq Get one sequence for a ragged array
getStartingValues Extract starting values for an MCMC chain from glmmPQL results
glmmBUGS A function to run Generalised Linear Mixed Models in Bugs
glmmPQLstrings An alternat interface to glmmPQL
muscleResult data set contains muscle result
ontario Ontario data on molar cancer
ontarioResult Ontario Winbugs Results
popDataAdjMat Data set contains the adjacency matrix
restoreParams Reparametrise bugs output
startingFunction Write a function to generate random MCMC starting values
summaryChain Compute mean, standard deviation, and quantiles of an MCMC run
winBugsRaggedArray Ragged Arrays for multilevel models in BUGS
writeBugsModel Write a bugs model file for a Generalised Linear Mixed Model