Inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm


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Documentation for package ‘hapassoc’ version 1.2-2

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anova.hapassoc Return likelihood ratio test of haplotype effect
hapassoc EM algorithm to fit maximum likelihood estimates of trait associations with SNP haplotypes
hypoDat Simulated data for a hypothetical binary trait
hypoDatGeno Simulated data for a hypothetical genetic SNPs
logLik.hapassoc Return log-likelihood
pre.hapassoc Pre-process the data before fitting it with hapassoc
summary.hapassoc Summarize results of the hapassoc function