boot.vc |
Bootstrap confidence intervals for variance components |
exhier |
Example data set with 4 levels, one diploid and one haploid locus |
g.stats |
Calculates likelihood-ratio G-statistic on contingency table |
g.stats.glob |
Likelihood ratio G-statistic over loci |
genot2al |
Separates diploid genotypes in its constituant alleles |
gtrunchier |
Genotypes at 6 microsatellite loci of Galba truncatula from different patches in Western Switzerland |
hierfstat |
General information on the hierfstat package |
prepdata |
Sort and renumber and recode levels for the hierarchical analysis if necessary |
read.fstat.data |
Reads data from a FSTAT file |
samp.between |
Shuffles a sequence among groups defined by the input vector |
samp.between.within |
Shuffles a sequence |
samp.within |
Shuffles a sequence within groups defined by the input vector |
test.between |
Tests the significance of the effect of test.lev on genetic differentiation |
test.between.within |
Tests the significance of the effect of test.lev on genetic differentiation |
test.g |
Tests the significance of the effect of level on genetic differentiation |
test.within |
Tests the significance of the effect of inner.level on genetic differentiation within blocks defined by outer.level |
varcomp |
Estimates variance components for each allele of a locus |
varcomp.glob |
Estimate variance components and hierarchical F-statistics over all loci |
yangex |
Example data set from Yang (1998) appendix |