Models and tests for departure from Hardy-Weinberg equilibrium and independence between loci.


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Documentation for package ‘hwde’ version 0.61

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decode.genotypes Creates contrasts that relate to a single locus
hwde Fit relevant models, and test for various types of departure from Hardy-Weinberg equilibrium. Allows only 2 alleles per locus. The number of loci is arbitrary.
hwexact Exact test of HWE
IndianIrish Observed genotype frequencies at MN and S loci, for 2 populations
make.contrasts Calculate contrasts required by the function
mendelABC Mendel's F2 trifactorial data for seed shape (A), cotyledon color (B) and seed coat color (C)
snphwe Exact test of HWE