Tools for working with points and intervals


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Documentation for package ‘intervals’ version 0.10.3

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intervals-package Tools for working with points and intervals
adjust_closure Re-represent integer intervals with open or closed endpoints
adjust_closure,Intervals-method Re-represent integer intervals with open or closed endpoints
adjust_closure,Intervals_full-method Re-represent integer intervals with open or closed endpoints
c Combine different interval matrix objects
closed Class "Intervals_virtual"
closed,Intervals_virtual-method Class "Intervals_virtual"
closed<-,Intervals-method Classes "Intervals" and "Intervals_full"
closed<-,Intervals_full-method Classes "Intervals" and "Intervals_full"
close_intervals Re-represent integer intervals with open or closed endpoints
close_intervals,Intervals_virtual-method Re-represent integer intervals with open or closed endpoints
clusters Identify clusters in a collection of positions or intervals
clusters,Intervals_virtual-method Identify clusters in a collection of positions or intervals
clusters,numeric-method Identify clusters in a collection of positions or intervals
coerce,Intervals,Intervals_full-method Classes "Intervals" and "Intervals_full"
coerce,Intervals_full,Intervals-method Classes "Intervals" and "Intervals_full"
coerce,Intervals_virtual,character-method Class "Intervals_virtual"
contract Expand or contract intervals
contract,Intervals_virtual-method Expand or contract intervals
distance_to_nearest Compute distance to nearest position in a set of intervals
distance_to_nearest,Intervals_virtual,Intervals_virtual-method Compute distance to nearest position in a set of intervals
distance_to_nearest,numeric,Intervals_virtual-method Compute distance to nearest position in a set of intervals
empty Identify empty interval rows
empty,Intervals-method Identify empty interval rows
empty,Intervals_full-method Identify empty interval rows
expand Expand or contract intervals
expand,Intervals_virtual-method Expand or contract intervals
head,Intervals_virtual-method Class "Intervals_virtual"
initialize,Intervals-method Classes "Intervals" and "Intervals_full"
initialize,Intervals_full-method Classes "Intervals" and "Intervals_full"
initialize,Intervals_virtual-method Class "Intervals_virtual"
Intervals Classes "Intervals" and "Intervals_full"
intervals Tools for working with points and intervals
Intervals-class Classes "Intervals" and "Intervals_full"
Intervals_full Classes "Intervals" and "Intervals_full"
Intervals_full-class Classes "Intervals" and "Intervals_full"
Intervals_virtual-class Class "Intervals_virtual"
interval_complement Compute the complement of a set of intervals
interval_complement,Intervals_virtual-method Compute the complement of a set of intervals
interval_difference Compute set difference
interval_difference,Intervals_virtual,Intervals_virtual-method Compute set difference
interval_intersection Compute the intersection of one or more sets of intervals
interval_intersection,Intervals_virtual-method Compute the intersection of one or more sets of intervals
interval_intersection,missing-method Compute the intersection of one or more sets of intervals
interval_overlap Assess which query intervals overlap which targets
interval_overlap,Intervals_virtual,Intervals_virtual-method Assess which query intervals overlap which targets
interval_overlap,Intervals_virtual,numeric-method Assess which query intervals overlap which targets
interval_union Compute the union of intervals in one or more interval matrices
interval_union,Intervals_virtual-method Compute the union of intervals in one or more interval matrices
interval_union,missing-method Compute the union of intervals in one or more interval matrices
is.na,Intervals_virtual-method Class "Intervals_virtual"
open_intervals Re-represent integer intervals with open or closed endpoints
open_intervals,Intervals_virtual-method Re-represent integer intervals with open or closed endpoints
reduce Compactly re-represent the points in a set of intervals
reduce,Intervals_virtual-method Compactly re-represent the points in a set of intervals
sgd Yeast gene model sample data
show,Intervals_virtual-method Class "Intervals_virtual"
size Compute interval sizes
size,Intervals-method Compute interval sizes
size,Intervals_full-method Compute interval sizes
t,Intervals_virtual-method Class "Intervals_virtual"
tail,Intervals_virtual-method Class "Intervals_virtual"
type Class "Intervals_virtual"
type,Intervals_virtual-method Class "Intervals_virtual"
type<-,Intervals_virtual-method Class "Intervals_virtual"
[,Intervals-method Classes "Intervals" and "Intervals_full"
[,Intervals_full-method Classes "Intervals" and "Intervals_full"
[<-,Intervals,ANY,missing,Intervals_virtual-method Classes "Intervals" and "Intervals_full"
[<-,Intervals_full,ANY,missing,Intervals_virtual-method Classes "Intervals" and "Intervals_full"