intervals-package |
Tools for working with points and intervals |
adjust_closure |
Re-represent integer intervals with open or closed endpoints |
adjust_closure,Intervals-method |
Re-represent integer intervals with open or closed endpoints |
adjust_closure,Intervals_full-method |
Re-represent integer intervals with open or closed endpoints |
c |
Combine different interval matrix objects |
closed |
Class "Intervals_virtual" |
closed,Intervals_virtual-method |
Class "Intervals_virtual" |
closed<-,Intervals-method |
Classes "Intervals" and "Intervals_full" |
closed<-,Intervals_full-method |
Classes "Intervals" and "Intervals_full" |
close_intervals |
Re-represent integer intervals with open or closed endpoints |
close_intervals,Intervals_virtual-method |
Re-represent integer intervals with open or closed endpoints |
clusters |
Identify clusters in a collection of positions or intervals |
clusters,Intervals_virtual-method |
Identify clusters in a collection of positions or intervals |
clusters,numeric-method |
Identify clusters in a collection of positions or intervals |
coerce,Intervals,Intervals_full-method |
Classes "Intervals" and "Intervals_full" |
coerce,Intervals_full,Intervals-method |
Classes "Intervals" and "Intervals_full" |
coerce,Intervals_virtual,character-method |
Class "Intervals_virtual" |
contract |
Expand or contract intervals |
contract,Intervals_virtual-method |
Expand or contract intervals |
distance_to_nearest |
Compute distance to nearest position in a set of intervals |
distance_to_nearest,Intervals_virtual,Intervals_virtual-method |
Compute distance to nearest position in a set of intervals |
distance_to_nearest,numeric,Intervals_virtual-method |
Compute distance to nearest position in a set of intervals |
empty |
Identify empty interval rows |
empty,Intervals-method |
Identify empty interval rows |
empty,Intervals_full-method |
Identify empty interval rows |
expand |
Expand or contract intervals |
expand,Intervals_virtual-method |
Expand or contract intervals |
head,Intervals_virtual-method |
Class "Intervals_virtual" |
initialize,Intervals-method |
Classes "Intervals" and "Intervals_full" |
initialize,Intervals_full-method |
Classes "Intervals" and "Intervals_full" |
initialize,Intervals_virtual-method |
Class "Intervals_virtual" |
Intervals |
Classes "Intervals" and "Intervals_full" |
intervals |
Tools for working with points and intervals |
Intervals-class |
Classes "Intervals" and "Intervals_full" |
Intervals_full |
Classes "Intervals" and "Intervals_full" |
Intervals_full-class |
Classes "Intervals" and "Intervals_full" |
Intervals_virtual-class |
Class "Intervals_virtual" |
interval_complement |
Compute the complement of a set of intervals |
interval_complement,Intervals_virtual-method |
Compute the complement of a set of intervals |
interval_difference |
Compute set difference |
interval_difference,Intervals_virtual,Intervals_virtual-method |
Compute set difference |
interval_intersection |
Compute the intersection of one or more sets of intervals |
interval_intersection,Intervals_virtual-method |
Compute the intersection of one or more sets of intervals |
interval_intersection,missing-method |
Compute the intersection of one or more sets of intervals |
interval_overlap |
Assess which query intervals overlap which targets |
interval_overlap,Intervals_virtual,Intervals_virtual-method |
Assess which query intervals overlap which targets |
interval_overlap,Intervals_virtual,numeric-method |
Assess which query intervals overlap which targets |
interval_union |
Compute the union of intervals in one or more interval matrices |
interval_union,Intervals_virtual-method |
Compute the union of intervals in one or more interval matrices |
interval_union,missing-method |
Compute the union of intervals in one or more interval matrices |
is.na,Intervals_virtual-method |
Class "Intervals_virtual" |
open_intervals |
Re-represent integer intervals with open or closed endpoints |
open_intervals,Intervals_virtual-method |
Re-represent integer intervals with open or closed endpoints |
reduce |
Compactly re-represent the points in a set of intervals |
reduce,Intervals_virtual-method |
Compactly re-represent the points in a set of intervals |
sgd |
Yeast gene model sample data |
show,Intervals_virtual-method |
Class "Intervals_virtual" |
size |
Compute interval sizes |
size,Intervals-method |
Compute interval sizes |
size,Intervals_full-method |
Compute interval sizes |
t,Intervals_virtual-method |
Class "Intervals_virtual" |
tail,Intervals_virtual-method |
Class "Intervals_virtual" |
type |
Class "Intervals_virtual" |
type,Intervals_virtual-method |
Class "Intervals_virtual" |
type<-,Intervals_virtual-method |
Class "Intervals_virtual" |
[,Intervals-method |
Classes "Intervals" and "Intervals_full" |
[,Intervals_full-method |
Classes "Intervals" and "Intervals_full" |
[<-,Intervals,ANY,missing,Intervals_virtual-method |
Classes "Intervals" and "Intervals_full" |
[<-,Intervals_full,ANY,missing,Intervals_virtual-method |
Classes "Intervals" and "Intervals_full" |