intervals-package {intervals} | R Documentation |
Tools for working with points and intervals
Description
Tools for working with and comparing sets of points and intervals.
Details
Index:
Intervals-class
- Classes
"Intervals"
and "Intervals_full"
.
Intervals_virtual-class
- Class
"Intervals_virtual"
.
c
- Concatenate different sets of intervals.
close_intervals
- Re-represent integer intervals with open or closed endpoints.
closed
- Accessor for
closed
slot: closure vector/matrix.
clusters
- Identify clusters in a collection of positions or intervals.
contract
- Contract sets.
distance_to_nearest
- Compute distance to nearest position in a set of intervals.
empty
- Identify empty interval rows.
expand
- Expand sets.
interval_complement
- Compute the complement of a set of intervals.
interval_difference
- Compute set difference.
interval_intersection
- Compute the intersection of one or more sets of intervals.
interval_overlap
- Assess which query intervals overlap which targets.
interval_union
- Compute the union of intervals in one or more interval matrices.
is.na
- Identify interval rows with
NA
endpoints.
reduce
- Compactly re-represent the points in a set of intervals.
sgd
- Yeast gene model sample data.
size
- Compute interval sizes.
type
- Accessor for
type
slot: Z or R.
Further information is available in the following vignettes:
intervals_overview
- Overview of the intervals package.
Acknowledgments
Thanks to Julien Gagneur, Simon Anders, and Wolfgang Huber for
numerous helpful suggestions about the package content and code.
Author(s)
Richard Bourgon <bourgon@ebi.ac.uk>
See Also
See the genomeIntervals
package in Bioconductor, which extends
the functionality of this package.
[Package
intervals version 0.10.3
Index]