methods {kin.cohort}R Documentation

methods for print and plot

Description

Functions to print a formatted output and produce plots

Usage

## S3 method for class 'kin.cohort':
print(x, descriptive = TRUE, cumrisk = TRUE, hazard = FALSE, survival = FALSE, 
        logrank = TRUE, HR = TRUE, digits = 5, ...)

## S3 method for class 'kin.cohort.boot':
print(x, cumrisk = TRUE, hazard = FALSE, HR = TRUE, conf = 0.95,
        digits = 5, show = TRUE, logrank = TRUE, ...)

## S3 method for class 'kin.cohort':
plot(x, what = c("cr", "hr", "crr"), min.age = min(x$knots), 
      max.age = max(x$knots), max.y, type, add=FALSE, color, line,  ...)

## S3 method for class 'kin.cohort.boot':
plot(x, conf = 0.95, what = c("cr", "hr", "crr"), min.age = min(x$knots), 
      max.age = max(x$knots), age.start = 0, start.ref, max.y, type,
      median = FALSE, add = FALSE, color, line, ...)

Arguments

x object to be printed or plotted
descriptive print table with number of events and person-years
cumrisk print cumulative risk
hazard print hazard
survival print survival
HR print harard ratios
logrank print logrank p value
digits digits for rounding
show do not print
conf coverage for confidence intervals
what type of plot desired: cumulative risk ("cr"), hazard ratio ("hr", for marginal method only), cumulative risk ratio ("crr", for moments method only)
min.age Minimal age for plots
max.age Maximal age for plots
age.start initial age value (x) for plots
start.ref initial risk value (y) for plots
max.y Max value for y axis
type type of line in plots
add If TRUE, then lines are added to current plot. Useful to compare analyses.
color change line colors using a vector of values
line change line width using a vector of values
median plot median of bootstrap samples instead of point estimates
... additional arguments for print or plot

Details

Specific output and plot types can be selected with arguments


[Package kin.cohort version 0.6 Index]