Design of experiments for detection of linkage disequilibrium


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Documentation for package ‘ldDesign’ version 1.1-0

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ld.design Functions for design of experiments to detect linkage disequilibrium
ld.power Functions for design of experiments to detect linkage disequilibrium
ld.sim Functions to simulate populations with a bi-allelic marker and QTL in linkage disequilibrium and test for association.
ld.sim1 Functions to simulate populations with a bi-allelic marker and QTL in linkage disequilibrium and test for association.
luo.ld.populations Luo's Linkage disequilibrium example populations
luo.ld.power Classical deterministic power calculation for association studies to detect linkage disequilibrium
oneway.bf.alpha Correspondence between significance levels and Bayes factors for effects of marker genotype classes.
SS.oneway.bf Bayes factors for one-way analysis of variance models.