markfreq.condense {mixstock}R Documentation

condense marker frequency list

Description

"condenses" standard marker-frequency-list data (marker samples from sources and mixed stocks) by removing unrepresented markers, lumping markers where that removes no information, etc.

Usage

markfreq.condense(sourcesamp=NULL, mixsamp=NULL, debug=FALSE, exclude.nomix=FALSE)

Arguments

sourcesamp Turtle data in standard form: list of sourcesamp (see below) and mixsamp OR matrix of source genotype samples (sources=columns, markers=rows)
mixsamp Vector of mixed stock marker samples
debug Print out debugging information?
exclude.nomix Exclude markers not found in the mixed stock?

Details

Criteria:

Value

"Standard" mixed stock analysis data set, suitably condensed.

sourcesamp source samples
mixsamp mixed stock samples
err was there an error in attempting to lump?

Author(s)

Ben Bolker

Examples

data(lahanas98raw,package="mixstock")
lahan98c <- markfreq.condense(as.mixstock.data(lahanas98raw))

[Package mixstock version 0.9 Index]