get.bot {mixstock} | R Documentation |
Read and write control files for Masuda and Pella's program
get.bot(fn) get.frq(fn) get.ctl(fn) get.bse(fn) put.ctl(fn,which=1,tot,ranseed=c(899271,4480026,90092812), thin=1,title="auto-gen R input",sourcenames,fprior,startval,H) put.bse(fn,sourcesamp) put.mix(fn,mixsamp) put.mp(data,tot=25000,title="Input file auto-gen from R", fn="test",ranseed=c(899271,4480026,90092812)) get.mp.input(fn,which=1)
fn |
file name (without extension) |
which |
numeric value of control file |
data |
data in mixstock.data format (list of sourcesamp and mixsamp) |
tot |
total number of Gibbs steps |
ranseed |
numeric vector for random-number seed |
thin |
thinning factor |
title |
title for input files |
sourcenames |
vector of source names |
fprior |
prior on source contributions (default=c(1/R,R) |
startval |
starting values for source contributions |
H |
number of markers |
sourcesamp |
matrix (HxR) of marker samples in sources |
mixsamp |
vector of marker sample in mixed population |
produces output files or returns a list of
sourcesamp |
source samples (matrix) |
mixsamp |
pooled samples (vector) |
a |
prior strength |
startiter |
starting iteration |
maxiter |
maximum iteration |
startfval |
starting fvalue |
thin |
thinning factor |
fprior |
source prior |
rptiter |
how often to print output to the screen |
put.mp and get.mp.input are portmanteau functions
Ben Bolker