msObjects {msProcess} | R Documentation |
Returns a vector of character strings (possibly of zero length)
which are the names of the msSet
objects in the working database
to which process
can be applied.
This function is mainly used to build the GUI for the msProcess package.
msObjects(process="msDenoise")
process |
a character string specifying the process to be applied.
The options are "msDenoise" ,
"msNoise" , "msDetrend" ,
"msNormalize" , "msPeak" ,
"msAlign" , and "msQuantify" .
Default: "msDenoise" . |
a character vector of names of the msSet
objects in the working database
to which process
can be applied or character(0)
if none applicable.
if (!exists("qcset")) data("qcset", package="msProcess") ## find the names of msSet objects to which msDenoise can be applied msObjects("msDenoise") ## find the names of msSet objects to which msDenoise can be applied my.qcset <- qcset msObjects("msDenoise") ## apply denoise, peak detection, and alignment denoised <- msDenoise(qcset) detected <- msPeak(denoised) aligned <- msPeak(detected) ## find the names of msSet objects to which msAlign can be applied msObjects("msAlign") ## find the names of msSet objects to which msQuantify can be applied msObjects("msQuantify")