ouch-package {ouch} | R Documentation |
The ouch package provides facilities for Ornstein-Uhlenbeck based methods of phylogenetic comparative analysis
The basic class, ouchtree
, is provided to encode a phylogenetic
tree. Plot and print methods are provided.
The class browntree
derives from class ouchtree
and
encodes the results of fitting a Brownian Motion model to data.
The class hansentree
derives from class ouchtree
and
encodes the results of fitting a Hansen model to data.
ouchtree
brown
,
browntree-class
hansen
,
hansentree-class
simulate-browntree
, simulate-hansentree
plot-browntree
, plot-hansentree
ape2ouch
ape2ouch
Aaron A. King (kingaa at umich dot edu)
Butler, M.A. and A.A. King (2004) Phylogenetic comparative analysis: a modeling approach for adaptive evolution. American Naturalist 164:683-695.