L1 (lasso) and L2 (ridge) penalized estimation in GLMs and in the Cox model


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Documentation for package ‘penalized’ version 0.9-23

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as.data.frame,breslow-method Breslow estimator object
as.data.frame,penfit-method Penalized regression object
as.list,breslow-method Breslow estimator object
as.matrix,breslow-method Breslow estimator object
basehaz,penfit-method Penalized regression object
basesurv Penalized regression object
basesurv,penfit-method Penalized regression object
breslow Breslow estimator object
breslow-class Breslow estimator object
coef,penfit-method Penalized regression object
coefficients,penfit-method Penalized regression object
contr.diff Contrast functions for penalized regression
contr.none Contrast functions for penalized regression
cvl Cross-validated penalized regression
fitted.values,penfit-method Penalized regression object
linear.predictors Penalized regression object
linear.predictors,penfit-method Penalized regression object
loglik Penalized regression object
loglik,penfit-method Penalized regression object
nki70 The 70 gene signature of the Netherlands Cancer Institute for prediction of metastasis-free survival, measured on 144 independent lymph node positive patients.
optL1 Cross-validated penalized regression
optL2 Cross-validated penalized regression
penalized Penalized regression
penalty Penalized regression object
penalty,penfit-method Penalized regression object
penfit Penalized regression object
penfit-class Penalized regression object
plot,breslow-method Breslow estimator object
plotpath Plotting the LASSO path
predict,penfit-method Prediction based on penfit objects
profL1 Cross-validated penalized regression
profL2 Cross-validated penalized regression
residuals,penfit-method Penalized regression object
show,breslow-method Breslow estimator object
show,penfit-method Penalized regression object
survival Breslow estimator object
survival,breslow-method Breslow estimator object
time,breslow-method Breslow estimator object
weights,penfit-method Penalized regression object
[,breslow-method Breslow estimator object
[[,breslow-method Breslow estimator object