summary.permax {permax} | R Documentation |
Finds and prints the most significant genes in the output of permax
summary.permax(object, data, nl=25, nr=25, ...)
object |
A dataframe of class permax (created by permax )
|
data |
The data matrix used as input to permax. If given, the rows of d corresponding to the most significant genes will also be printed. |
nl |
The nl most significant genes in the lower tail will be printed |
nr |
The nr most significant genes in the upper tail will be printed |
... |
Supplied for compatibility but not used. |
If d is given, it must be a data frame with row.names(d)
corresponding
to row.names(object)
, or a matrix with dimnames(d)[[1]]
corresponding to row.names(object)
.
The purpose of including d is primarily to print the
rows of the original data corresponding to the most significant
statistics.
permax
# An example is given in the permax help file