upgma {phangorn} | R Documentation |
UPGMA clustering. Just a wrapper function around hclust
.
upgma(D, method = "average", ...)
D |
A distance matrix. |
method |
The agglomeration method to be used. This should be (an unambiguous abbreviation of) one of "ward", "single", "complete", "average", "mcquitty", "median" or "centroid". The default is "average". |
... |
Further arguments passed to or from other methods. |
A phylogenetic tree of class phylo
.
Klaus Schliep K.P.Schliep@massey.ac.nz
data(Laurasiatherian) dm = dist.logDet(Laurasiatherian) tree = upgma(dm) plot(tree)