Colon |
Gene expression data from Alon et al. (1999) |
Ecoli |
Ecoli gene expression and connectivity data from Kao et al. (2003) |
gsim |
GSIM for binary data |
gsim.cv |
Determination of the ridge regularization parameter and the bandwidth to be used for classification with GSIM for binary data |
leukemia |
Gene expression data from Golub et al. (1999) |
mgsim |
GSIM for categorical data |
mgsim.cv |
Determination of the ridge regularization parameter and the bandwidth to be used for classification with GSIM for categorical data |
mrpls |
Ridge Partial Least Square for categorical data |
mrpls.cv |
Determination of the ridge regularization parameter and the number of PLS components to be used for classification with RPLS for categorical data |
pls.lda |
Classification with PLS Dimension Reduction and Linear Discriminant Analysis |
pls.lda.cv |
Determination of the number of latent components to be used for classification with PLS and LDA |
pls.regression |
Multivariate Partial Least Squares Regression |
pls.regression.cv |
Determination of the number of latent components to be used in PLS regression |
preprocess |
preprocess for microarray data |
rpls |
Ridge Partial Least Square for binary data |
rpls.cv |
Determination of the ridge regularization parameter and the number of PLS components to be used for classification with RPLS for binary data |
SRBCT |
Gene expression data from Khan et al. (2001) |
TFA.estimate |
Prediction of Transcription Factor Activities using PLS |
variable.selection |
Variable selection using the PLS weights |