Statistical and Population Genetics

Documentation for package ‘popgen’

LDmat	Calculate LD measures for haplotype data.
nps	Non-parametric clustering of SNP genotype data.
nps.plot	Gap statistic plot for nps function
popdiv	Population diversity function
popdiv.convert	Convert a dataset for use in function popdif.
ps	Parametric model-based inference of population structure.
simMD	Simulate multi-population unlinked genotype data from a Multinomial-Dirichlet model.
treesim	Standard neutral coalescent simulator