Statistical and Population Genetics


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Documentation for package ‘popgen’

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LDmat Calculate LD measures for haplotype data.
nps Non-parametric clustering of SNP genotype data.
nps.plot Gap statistic plot for nps function
popdiv Population diversity function
popdiv.convert Convert a dataset for use in function popdif.
ps Parametric model-based inference of population structure.
simMD Simulate multi-population unlinked genotype data from a Multinomial-Dirichlet model.
treesim Standard neutral coalescent simulator