qb.hpdchr {qtlbim} | R Documentation |
Find area under posterior by chromosome for genome-wide HPD region.
qb.hpdchr(qbObject, level = 0.5, height, hpd, chr, smooth = 3)
qbObject |
Object of class qb . |
level |
Value between 0 and 1 of HPD coverage. Ignored if
height is supplied. |
height |
Height of posterior corresponding to
level . Determined from level and hpd by default. |
hpd |
Object of class qb.hpdone . Created internally be default. |
chr |
Chromosomes to include; default determined by genome-wide HPD region. |
smooth |
Degree of smoothing. |
Determine 100*level
percent HPD coverage by chromosome for a
given height
threshold.
A List with the following elements:
hpd.height |
Height of HPD threshold. Name of hpd.height
is the level . |
chr.posterior |
Posterior probability by chromosome as percent. |
Brian S. Yandell
http://www.qtlbim.org
data(qbExample) qb.hpdchr(qbExample)