qb.slicetwo {qtlbim}R Documentation

Slices for epistatic pairs.

Description

These routines refine QTL positions for epistatic pairs and show plots to reveal the nature of epistasis.

Usage

qb.slicetwo(qbObject, chr, pos, type.scan = "2logBF", width = 10, ...)
## S3 method for class 'qb.slicetwo':
summary(object, ...)
## S3 method for class 'qb.slicetwo':
print(x, ...)
## S3 method for class 'qb.slicetwo':
plot(x, byrow = TRUE, figs, auto.par = TRUE, col, lty, ...)

Arguments

qbObject Object of class qb.
object Object of class qb.slicetwo.
x Object of class qb.slicetwo.
chr Chromosome vector.
pos Position vector corresponding to chr.
type.scan Type of profile scan; see qb.scanone.
width Width of slice.
byrow Arrange plots by row (for slides) if TRUE.
figs Plot only selected figures. Full set of c("profile", "effects", "cellmean", "effectplot") is default.
auto.par Automatic setting of plot parameters for multiple plots if TRUE.
col,lty colors and line types for cellmean and interaction plots
... Extra plot options.

Author(s)

Brian S. Yandell, yandell@stat.wisc.edu

References

http://www.qtlbim.org

See Also

qb.scantwo, qb.sliceone

Examples

data(qbExample)

temp <- qb.slicetwo(qbExample, chr = c(1,2), pos = c(45,12))
summary(temp)
plot(temp)

[Package qtlbim version 1.9.3 Index]