plot.qb.scanone {qtlbim} | R Documentation |
Plot or print marginal diagnostics of effects from a qb.scanone object.
## S3 method for class 'summary.qb.scanone': print(x, digits = 3, ...) ## S3 method for class 'qb.scanone': print(x, digits = 3, ...) ## S3 method for class 'qb.scanone': plot(x, chr, scan, ylim, scan.name, ...)
x |
An object of class qb.scanone . |
digits |
Significant digits to round with print. |
chr |
Vector of chromosomes to plot. Must be integer. |
scan |
The model effects to include, the default is all
those included in the scanone object x . |
ylim |
Vector of length 2 with vertical limits. |
scan.name |
Name of scan for plot; default is
"effects" or comma-separated catenation of scan . |
... |
Other values passed to the generic plot function. |
This plot method uses plot.scanone
as the engine to plot
marginal posterior diagnostics created with qb.scanone
. When
there are multiple effects in x
, these may be organized into one
or several stacked plots using scan
. The default for most
diagnostics except counts is scan
= c("sum", "main",
"epis"). Counts and posterior diagnostics are typically plotted in two
stacked plots. Individual columns from the x
object can be
plotted by specifying their names as a vector to option scan
.
Arguments col
and lty
use keywords to names in scan
argument. Default main
and sub
arguments are provided.
Data frame with colors and line types used in plots.
Brian S. Yandell, yandell@stat.wisc.edu
qb.scanone
, summary.qb.scanone
,
plot.scanone
example(qb.scanone)