plot.qb.pairloci {qtlbim}R Documentation

Summaries of epistatic pairs of loci.

Description

Summaries and detailed scatterplot showing all MCMC samples for epistatic pairs for selected chromosomes.

Usage

qb.pairloci(qbObject, chr, ...)
## S3 method for class 'qb.pairloci':
plot(x, main, cex = 0.75, ... )
## S3 method for class 'qb.pairloci':
print(x, ... )
## S3 method for class 'qb.pairloci':
summary(object, ... )

Arguments

qbObject Object of class qb.
object Object of class qb.pairloci.
x Object of class qb.pairloci.
chr Identifiers for one or two chromosomes.
main Main title for plot.
cex Character expansion of plot symbols.
... Parameters to methods.

Details

Find pairs of loci in MCMC samples. Produce scatter plot with generic plot or show numerical summary. The plot provides position detail complementary to qb.multloci and qb.scantwo.

Author(s)

Brian S. Yandell, yandell@stat.wisc.edu

References

http://www.qtlbim.org

See Also

plot.qb, qb.scantwo, qb.multloci

Examples

data(qbExample)

tmpar <- par(mfrow = c(2,2))
temp <- qb.pairloci(qbExample, c(1,2))
summary(temp)
plot(temp)
temp <- qb.pairloci(qbExample, c(1,3))
summary(temp)
plot(temp)
par(tmpar)

[Package qtlbim version 1.9.3 Index]