qb.slicetwo {qtlbim} | R Documentation |
These routines refine QTL positions for epistatic pairs and show plots to reveal the nature of epistasis.
qb.slicetwo(qbObject, chr, pos, type.scan = "2logBF", width = 10, ...) ## S3 method for class 'qb.slicetwo': summary(object, ...) ## S3 method for class 'qb.slicetwo': print(x, ...) ## S3 method for class 'qb.slicetwo': plot(x, byrow = TRUE, figs, auto.par = TRUE, col, lty, ...)
qbObject |
Object of class qb . |
object |
Object of class qb.slicetwo . |
x |
Object of class qb.slicetwo . |
chr |
Chromosome vector. |
pos |
Position vector corresponding to chr . |
type.scan |
Type of profile scan; see qb.scanone . |
width |
Width of slice. |
byrow |
Arrange plots by row (for slides) if TRUE . |
figs |
Plot only selected figures. Full set of c("profile",
"effects", "cellmean", "effectplot") is default. |
auto.par |
Automatic setting of plot parameters for multiple
plots if TRUE . |
col,lty |
colors and line types for cellmean and interaction plots |
... |
Extra plot options. |
Brian S. Yandell, yandell@stat.wisc.edu
data(qbExample) temp <- qb.slicetwo(qbExample, chr = c(1,2), pos = c(45,12)) summary(temp) plot(temp)