Run Bayesian MCMC Models in the BUGS syntax from Within R


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Documentation for package ‘runjags’ version 0.9.3-3

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ask Obtain Input from User With Error Handling
autorun.JAGS Run a User Specified Bayesian MCMC Model in JAGS with Automatically Calculated Run Length and Convergence Diagnostics
autorun.jags Run a User Specified Bayesian MCMC Model in JAGS with Automatically Calculated Run Length and Convergence Diagnostics
autorun.JAGSfile Read a User Specified Model in a WinBUGS Type Textfile or Character Variable, and Run the Simulation in JAGS with Automatically Calculated Run Length and Convergence Diagnostics
autorun.jagsfile Read a User Specified Model in a WinBUGS Type Textfile or Character Variable, and Run the Simulation in JAGS with Automatically Calculated Run Length and Convergence Diagnostics
combine.MCMC Combine Two or More MCMC Objects With the Same Number of Chains Into One Longer MCMC Object
combine.mcmc Combine Two or More MCMC Objects With the Same Number of Chains Into One Longer MCMC Object
dump.format Produce a Character String in the R Dump Format to Be Used With Jags
findJAGS Attempt to Locate a JAGS Install
findjags Attempt to Locate a JAGS Install
new_unique Create a Unique Filename
read.WinBUGS Extract Any Models, Data, Monitored Variables or Initial Values As Character Vectors from a Winbugs Type Textfile
read.winbugs Extract Any Models, Data, Monitored Variables or Initial Values As Character Vectors from a Winbugs Type Textfile
run.JAGS Run a User Specified Bayesian MCMC Model in JAGS from Within R
run.jags Run a User Specified Bayesian MCMC Model in JAGS from Within R
run.JAGSfile Read a User Specified Model in a WinBUGS Type Textfile or Character Variable, and Run the Simulation in JAGS from Within R
run.jagsfile Read a User Specified Model in a WinBUGS Type Textfile or Character Variable, and Run the Simulation in JAGS from Within R
testJAGS Analyse the System to Check That Jags Is Installed
testjags Analyse the System to Check That Jags Is Installed
timestring Calculate the Elapsed Time in Sensible Units