plotCL {scape} | R Documentation |
Plot scape
model fit to catch-at-length data.
plotCL(model, what="c", fit=TRUE, series=NULL, sex=NULL, years=NULL, lengths=NULL, axes=TRUE, same.limits=TRUE, log=FALSE, base=10, eps.log=1e-5, main="", xlab="", ylab="", cex.main=1.2, cex.lab=1, cex.strip=0.8, cex.axis=0.8, las=!fit, tck=c(1,fit)/2, tick.number=5, lty.grid=3, col.grid="grey", pch=16, cex.points=0.5, col.points="black", lty.lines=1, lwd.lines=2, col.lines=c("red","blue"), plot=TRUE, ...)
model |
fitted scape model containing element CLc
and/or CLs . |
what |
what should be plotted: "c" [ommercial] or
"s" [urvey] catch at length. |
fit |
whether fitted values should be overlaid on observed data. |
series |
vector of strings indicating which gears or surveys should be plotted (first by default). |
sex |
string indicating which sex should be plotted (both by default). |
years |
vector of numbers indicating which years should be plotted (all by default). |
lengths |
vector of numbers indicating which lengths should be plotted (all by default). |
axes |
whether axis values should be plotted. |
same.limits |
whether panels should have same y-axis limits. |
log |
whether values should be log-transformed. |
base |
logarithm base. |
eps.log |
small number to add before log-transforming to avoid log 0. |
main |
main title. |
xlab |
x-axis label. |
ylab |
y-axis label. |
cex.main |
size of main title. |
cex.lab |
size of axis labels. |
cex.strip |
size of strip labels. |
cex.axis |
size of tick labels. |
las |
orientation of tick labels: 0=parallel, 1=horizontal, 2=perpendicular, 3=vertical. |
tck |
tick mark length. |
tick.number |
number of tick marks. |
lty.grid |
line type of gridlines. |
col.grid |
colour of gridlines. |
pch |
symbol for points. |
cex.points |
size of points. |
col.points |
colour of points. |
lty.lines |
line type of main lines, possibly a vector where element 2 refers to males. |
lwd.lines |
line width of main lines, possibly a vector where element 2 refers to males. |
col.lines |
colour of main lines, possibly a vector where element 2 refers to males. |
plot |
whether to draw plot. |
... |
passed to xyplot , panel.xyplot ,
panel.superpose , and panel.superpose.2 . |
When plot=TRUE
, a trellis plot is drawn and a data frame is
returned, containing the data used for plotting. When
plot=FALSE
, a trellis object is returned.
This function tries to draw the plot on a trellis device with a white background.
The Args
function from the gdata package is recommended
for reviewing the arguments, instead of args
.
Arni Magnusson arnima@u.washington.edu.
Lattice
, xyplot
,
panel.xyplot
,
panel.superpose
,
balloonplot
.
scape-package
gives an overview of the package.
plotCL(x.ling, fit=FALSE, strip=FALSE, series="1", sex="Female", xlab="Length (cm)", ylab="Year") plotCL(x.oreo, xlab="Length (cm)", ylab="Proportion in catch") plotCL(x.oreo, "s", layout=c(2,1), xlab="Length (cm)", ylab="Observed proportion in survey", cex.points=0.8, col.points=c("red","blue"), lty.lines=0) plotCL(x.ling, fit=FALSE, series="2", xlab="Length (cm)", ylab="Observed proportion in trawl catch")