scape-package {scape}R Documentation

Statistical Catch-at-Age Plotting Environment

Description

Import and plot results from statistical catch-at-age models, used in fisheries stock assessments.

Details

Import model results:
importCol Coleraine model output
Plot model fit to data:
plotCA catch at age
plotCL catch at length
plotIndex abundance index
plotLA length at age
Plot derived quantities:
plotB biomass, recruitment, and landings
plotN numbers at age
plotSel selectivity and maturity
Examples:
x.cod, x.ling, x.oreo, x.sbw cod, ling, oreo, and whiting assessments

The vignette ‘scape/doc/dsc.pdf’ provides background information and introduces the design of scape and scapeMCMC, but is not updated. Additional details are found on the help(package="scape") page.

Note

The functions Args and ll (package gdata) can be useful for browsing unwieldy functions and objects.

Author(s)

Arni Magnusson arnima@u.washington.edu.

See Also

All scape graphics are trellis plots, rendered with the lattice package. Once the best model(s) have been chosen, the scapeMCMC package can be used to diagnose MCMC runs.


[Package scape version 1.0-8 Index]