plotB {scape} | R Documentation |
Plot scape
model predicted biomass, stock recruitment, and
landings.
plotB(model, what="d", series=NULL, years=NULL, axes=TRUE, div=1, legend="bottom", main="", xlab="", ylab="", cex.main=1.2, cex.legend=1, cex.lab=1, cex.axis=0.8, las=1, tck=c(1,what=="d")/2, tick.number=5, lty.grid=3, col.grid="white", pch=16, cex.points=0.8, col.points="black", lty.lines=1:3, lwd.lines=2, col.lines="black", ratio.bars=3, col.bars="grey", plot=TRUE, ...)
model |
fitted scape model. |
what |
what should be plotted: "d" [efault],
"s" [tock recruitment], or "l" [andings]. |
series |
vector of strings indicating which column names in
model$B data frame should be plotted (all by default). |
years |
vector of numbers indicating which years should be included (all by default). |
axes |
whether axis values should be plotted. |
div |
denominator to shorten values on the y axis, or a vector with two elements referring to x and y axis. |
legend |
legend location: "bottom" , "left" ,
"top" , "right" , or "" to suppress legend. |
main |
main title. |
xlab |
x-axis label. |
ylab |
y-axis label. |
cex.main |
size of main title. |
cex.legend |
size of legend text. |
cex.lab |
size of axis labels. |
cex.axis |
size of tick labels. |
las |
orientation of tick labels: 0=parallel, 1=horizontal, 2=perpendicular, 3=vertical. |
tck |
tick mark length. |
tick.number |
number of tick marks. |
lty.grid |
line type of gridlines. |
col.grid |
colour of gridlines. |
pch |
symbol for points. |
cex.points |
size of points. |
col.points |
colour of points. |
lty.lines |
line type of main lines, possibly a vector. |
lwd.lines |
line width of main lines, possibly a vector. |
col.lines |
colour of main lines, possibly a vector. |
ratio.bars |
width of bars. |
col.bars |
colour of bars. |
plot |
whether to draw plot. |
... |
passed to xyplot and panel.superpose . |
The "d"
[efault] plot shows spawning biomass and vulnerable
biomass as lines, and landings as bars, on the same scale.
When plot=TRUE
, a trellis plot is drawn and a data frame is
returned, containing the data used for plotting. When
plot=FALSE
, a trellis object is returned.
This function tries to draw the plot on a trellis device with a white background.
The Args
function from the gdata package is recommended
for reviewing the arguments, instead of args
.
Arni Magnusson arnima@u.washington.edu.
Lattice
, xyplot
,
panel.barchart
,
panel.superpose
.
scape-package
gives an overview of the package.
plotB(x.ling, series=c("VB.1","VB.2","Y"), div=1000, xlab="Year\n", ylab="Biomass and landings (1000 t)") plotB(x.ling, "s", div=1000, xlab="Biomass age 4+ (1000 t)", ylab="Recruitment (million one-year-olds)")