plotLA {scape} | R Documentation |
Plot scape
model fit to length-at-age data.
plotLA(model, together=FALSE, sex=NULL, axes=TRUE, same.limits=TRUE, between=list(x=axes,y=axes), ylim=NULL, bands=1, main="", xlab="", ylab="", cex.main=1.2, cex.lab=1, cex.strip=0.8, cex.axis=0.8, las=1, tck=0, tick.number=5, lty.grid=3, col.grid="grey", pch=16, cex.points=0.5, col.points="black", lty.lines=1, lwd.lines=4, col.lines=c("red","blue"), lty.bands=2*(!together), lwd.bands=1, col.bands="black", plot=TRUE, ...)
model |
fitted scape model containing element LA . |
together |
whether both sexes should be plotted in one panel. |
sex |
string indicating which sex should be plotted (both by default). |
axes |
whether axis values should be plotted. |
same.limits |
whether panels should have same y-axis limits. |
between |
list with x and y indicating panel
spacing. |
ylim |
vector with lower and upper y-axis limits. |
bands |
extent of error bands relative to standard error. |
main |
main title. |
xlab |
x-axis label. |
ylab |
y-axis label. |
cex.main |
size of main title. |
cex.lab |
size of axis labels. |
cex.strip |
size of strip labels. |
cex.axis |
size of tick labels. |
las |
orientation of tick labels: 0=parallel, 1=horizontal, 2=perpendicular, 3=vertical. |
tck |
tick mark length. |
tick.number |
number of tick marks. |
lty.grid |
line type of gridlines. |
col.grid |
colour of gridlines. |
pch |
symbol for points, possibly a vector where element 2 refers to males. |
cex.points |
size of points, possibly a vector where element 2 refers to males. |
col.points |
colour of points, possibly a vector where element 2 refers to males. |
lty.lines |
line type of main lines, possibly a vector where element 2 refers to males. |
lwd.lines |
line width of main lines, possibly a vector where element 2 refers to males. |
col.lines |
colour of main lines, possibly a vector where element 2 refers to males. |
lty.bands |
line type of error bands. |
lwd.bands |
line width of error bands. |
col.bands |
colour of error bands, possibly a vector where element 2 refers to males. |
plot |
whether to draw plot. |
... |
passed to xyplot and panel.superpose.2 . |
When plot=TRUE
, a trellis plot is drawn and a data frame is
returned, containing the data used for plotting. When
plot=FALSE
, a trellis object is returned.
This function tries to draw the plot on a trellis device with a white background.
The Args
function from the gdata package is recommended
for reviewing the arguments, instead of args
.
Arni Magnusson arnima@u.washington.edu.
Lattice
, xyplot
,
panel.xyplot
,
panel.superpose
.
scape-package
gives an overview of the package.
plotLA(x.oreo, xlab="Age", ylab="Length (cm)") mykey <- list(text=list(lab=c("Female","Male")), space="right", lines=list(lwd=4,col=c("red","blue"))) plotLA(x.oreo, together=TRUE, xlab="Age", ylab="Length (cm)", pch=NA, key=mykey) mykey <- list(text=list(lab=c("Female","Male")), space="right", points=list(pch=16,cex=0.5,col=c("red","blue"))) plotLA(x.oreo, together=TRUE, xlab="Age", ylab="Length (cm)", col.points=c("red","blue"), lty.lines=0, key=mykey)