x.sbw {scape}R Documentation

Whiting Assessment

Description

Stock assessment data and model fit for southern blue whiting (Micromesistius australis) in New Zealand waters, using a Coleraine statistical catch-at-age model.

This is a single-sex model with 11 age classes, the catch data starting in 1979 and ending in 2002. The model was fitted to two data components: survey abundance index and commercial catch at age.

Usage

x.sbw

Format

List of class scape containing:
N predicted numbers at age
B predicted biomass, recruitment, and observed landings (year things)
Sel predicted selectivity and observed maturity (age things)
Dev predicted recruitment deviates from the stock-recruitment curve
Survey survey abundance index and fit
CAc commercial C@A (catch at age) and fit

Details

The survey abundance index was preprocessed so that it contains only age 4 and older.

Estimated parameters: R0, Rinit, Rplus, Sleft[commercial], Sfull[c], q, and 33 recruitment deviates.

Note

The list was imported from the file ‘scape/example/sbw.res’ using importCol.

The functions ll (package gdata) and head are recommended for browsing model results, e.g. ll(x.sbw); ll(x.sbw$N); head(x.sbw$N).

Source

Annala, J.H., K.J. Sullivan, C.J. O'Brien, N.W.M. Smith, and S.M. Grayling (eds.) 2003. Report from the Fishery Assessment Plenary: Stock assessments and yield estimates. Wellington: Ministry of Fisheries. Available from NIWA library, Wellington.

References

Hilborn, R., M. Maunder, A. Parma, B. Ernst, J. Payne, and P. Starr. 2003. Coleraine: A generalized age-structured stock assessment model. User's manual version 2.0. University of Washington Report SAFS-UW-0116. Available at http://fish.washington.edu/research/coleraine/coleraine.pdf.

Magnusson, A. and R. Hilborn. 2004. What is it in fisheries data that tells us about population abundance? Poster presented at the 4th World Fisheries Congress, Vancouver, BC. Available from the author.

See Also

importCol, x.cod, x.ling, x.oreo.

scape-package gives an overview of the package.

Examples

plotB(x.sbw)
plotCA(x.sbw, "c")
plotIndex(x.sbw, "s")
plotN(x.sbw)
plotSel(x.sbw)

[Package scape version 1.0-8 Index]