summary.maxchi {stepwise} | R Documentation |
Print a summary of a maxchi object
## S3 method for class 'maxchi': summary(object, ...)
object |
A list object of class maxchi output by the maxchi function |
... |
Additional arguments to the summary function (currently unused) |
The output of maxchi
includes information on all site-
and pair-specific chi-squares that exceed the 90th percentile of
the permutation distribution. The summary.maxchi
function computes
maximum site-specific measures (i.e. maxima over all sequence-pair
chi-squares from the same site) and reports all sequence pairs
that tied for these maximum values.
siteWinlocs |
Window locations with significant recombination signal |
siteChisqs |
The maximum chi-square at these window locations |
pairs |
The pair(s) that give the maximum chi-square statistic at each window location |
Brad McNeney <mcneney@stat.sfu.ca>, Jinko Graham <jgraham@stat.sfu.ca>, Sigal Blay <sblay@sfu.ca>
demo(maxchi)