summary.maxchi {stepwise}R Documentation

Summary of a maxchi object

Description

Print a summary of a maxchi object

Usage

 ## S3 method for class 'maxchi':
 summary(object, ...) 

Arguments

object A list object of class maxchi output by the maxchi function
... Additional arguments to the summary function (currently unused)

Details

The output of maxchi includes information on all site- and pair-specific chi-squares that exceed the 90th percentile of the permutation distribution. The summary.maxchi function computes maximum site-specific measures (i.e. maxima over all sequence-pair chi-squares from the same site) and reports all sequence pairs that tied for these maximum values.

Value

siteWinlocs Window locations with significant recombination signal
siteChisqs The maximum chi-square at these window locations
pairs The pair(s) that give the maximum chi-square statistic at each window location

Author(s)

Brad McNeney <mcneney@stat.sfu.ca>, Jinko Graham <jgraham@stat.sfu.ca>, Sigal Blay <sblay@sfu.ca>

See Also

maxchi

Examples

 demo(maxchi) 

[Package stepwise version 0.2-4 Index]