plot.wilma {supclust}R Documentation

2-Dimensional Visualization of Wilma's Output

Description

Yields a projection of the cases (for example n gene expression profiles) into the space of the first two gene group centroids that were identified by wilma.

Usage

plot.wilma(x, xlab = NULL, ylab = NULL, col = seq(x$yvals),
           main = "2-Dimensional Projection of Wilma's Output", ...)

Arguments

x An R object of class "wilma", typically the result of wilma().
xlab A character string, giving the annotation of the x-axis.
ylab A character string, giving the annotation of the x-axis.
col A numeric vector of length 2, coding the colors that will be used for plotting the class labels.
main A character string, giving the title of the plot.
... Further arguments passed to and from methods.

Author(s)

Marcel Dettling, dettling@stat.math.ethz.ch

References

Marcel Dettling (2002) Supervised Clustering of Genes, see http://stat.ethz.ch/~dettling/supercluster.html

Marcel Dettling and Peter Bühlmann (2002). Supervised Clustering of Genes. Genome Biology, 3(12): research0069.1-0069.15.

See Also

wilma

Examples

 ## Running the examples of Wilma's help page
 example(wilma, echo = FALSE)
 plot(fit)

[Package supclust version 1.0-5 Index]