build.data {varmixt}R Documentation

How to build gene expression data object wiht unpaired data

Description

This function performs simple operations to build an object for further processing with analysis functions

Usage

build.data(name,cond1,cond2,badqual=NULL,gene.anot=NULL,min.rep=2)

Arguments

name vector with the identifier of each gene (one gene per row).
cond1 matrix of gene log-intensity in condition 1. The matrix has one gene per row and one replicate per column
cond2 matrix of gene log-intensity in condition 1
badqual Optional argument : integer matrix of number of bad quality observation per gene and replicate. Do not use badqual with different number of replicates in each condition
gene.anot Optional arguments (vector, data.frame, matrix..) with extra annotation on the genes
min.rep Minimum number of non-missing value per gene and per condition. Must be at least 2.

Value

A gene expression data object for further processing

Author(s)

Paul Delmar


[Package varmixt version 0.2-4 Index]