fdr.compare.method {varmixt}R Documentation

Comparison of the different analysis methods

Description

This function compares the different analysis methods for a given FDR threshold

Usage

fdr.compare.method(data,qval=0.05,display.all=FALSE,lambda=seq(0,0.95,0.05))

Arguments

data gene expression data object
qval FDR cut-off
display.all
lambda Argument of the q-value function

Value

A data frame with each gene classified as regulated/not-regulated in for each method (gene-specific, homoscedastic, Varmixt). Also prints the tables of comparison.

Author(s)

Paul Delmar

See Also

fdr.compare.res,compare.res,vm.analysis, vm.analysis.paired


[Package varmixt version 0.2-4 Index]