build.data.paired {varmixt}R Documentation

How to build a gene expression data object with paired data

Description

Performs simple operation to build an object for further processing with analysis functions

Usage

build.data.paired(name, ratio, meanint, badqual = NULL, gene.anot = NULL,min.rep=2)

Arguments

name vector with the identifier of each gene (one gene per row).
ratio matrix of gene log-ratio. The matrix has one gene per row and one replicate per column
meanint matrix of gene log-intensity
badqual Optional argument : integer matrix of number of bad quality observation per gene and replicate. Do not use badqual with different number of replicates in each condition
gene.anot Optional arguments (vector, data.frame, matrix..) with extra annotation on the genes
min.rep Minimum number of non-missing value per gene and per condition. Must be at least 2.

Value

A gene expression data object for futher processing

Author(s)

Paul Delmar


[Package varmixt version 0.2-4 Index]