Chemical Thermodynamics and Activity Diagrams


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Documentation for package ‘CHNOSZ’ version 0.9

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A B C D E F G H I L M N O P R S T U W Y Z

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CHNOSZ-package Chemical Thermodynamics and Activity Diagrams

-- A --

abundance.new Calculate and Plot Relative Abundances of Species
abundance.old Calculate and Plot Relative Abundances of Species
add.obigt Utility and Miscellaneous Functions
add.protein Utility and Miscellaneous Functions
affinity Chemical Affinities of Formation Reactions
aminoacids Utility and Miscellaneous Functions
apc Mass Transfer Calculations
axis.label Utility and Miscellaneous Functions

-- B --

basis Basis Species
basis.comp Utility and Miscellaneous Functions
buffer Chemical Potential Buffers

-- C --

c2s Utility and Miscellaneous Functions
can.be.numeric Utility and Miscellaneous Functions
cgl Equations of State
change Utility and Miscellaneous Functions
CHNOSZ Chemical Thermodynamics and Activity Diagrams
convert Unit Conversions

-- D --

describe Utility and Miscellaneous Functions
diagram Calculate and Plot Relative Abundances of Species
dPdTtr Utility and Miscellaneous Functions
draw.diversity Diversity Calculations for Chemical Species
draw.transfer Mass Transfer Calculations

-- E --

ECO Thermodynamic Properties and Compositional Data
element Utility and Miscellaneous Functions
energy Chemical Affinities of Formation Reactions
energy.args Chemical Affinities of Formation Reactions
envert Unit Conversions
eos.args Utility and Miscellaneous Functions
eqdata Read data from an EQ6 output file
examples Utility and Miscellaneous Functions
expand.formula Utility and Miscellaneous Functions
extremes Diversity Calculations for Chemical Species

-- F --

feldspar Mass Transfer Calculations

-- G --

get.protein Amino Acid Compositions of Collections of Proteins
GHS Utility and Miscellaneous Functions
grep.file Utility and Miscellaneous Functions
groups Thermodynamic Properties and Compositional Data

-- H --

hkf Equations of State

-- I --

info Search the Thermodynamic Database
ionize Ionization Properties of Proteins

-- L --

label.plot Utility and Miscellaneous Functions
longex Utility and Miscellaneous Functions
lsub Utility and Miscellaneous Functions
lsum Utility and Miscellaneous Functions

-- M --

makeup Chemical Formulas and Compositions
mod.buffer Chemical Potential Buffers
mod.obigt Utility and Miscellaneous Functions
MP90.cp Utility and Miscellaneous Functions
mtitle Utility and Miscellaneous Functions
mylapply Utility and Miscellaneous Functions

-- N --

nonideal Utility and Miscellaneous Functions
nucleicacids Utility and Miscellaneous Functions
nuts Unit Conversions

-- O --

OBIGT Thermodynamic Properties and Compositional Data
opt Thermodynamic Properties and Compositional Data
outvert Unit Conversions

-- P --

PM90 Thermodynamic Properties and Compositional Data
pprod Utility and Miscellaneous Functions
protein Properties of Proteins
protein.info Properties of Proteins
protein.length Utility and Miscellaneous Functions
protein.residue Properties of Proteins
proteins Thermodynamic Properties and Compositional Data
psum Utility and Miscellaneous Functions

-- R --

read.fasta Utility and Miscellaneous Functions
read.supcrt Properties of Species and Reactions
residue.info Properties of Proteins
revisit Diversity Calculations for Chemical Species
RH95 Thermodynamic Properties and Compositional Data
richness Diversity Calculations for Chemical Species
RT71 Thermodynamic Properties and Compositional Data

-- S --

s2c Utility and Miscellaneous Functions
SGD Thermodynamic Properties and Compositional Data
source Thermodynamic Properties and Compositional Data
spearman Utility and Miscellaneous Functions
species Species of Interest
state.args Utility and Miscellaneous Functions
stress Thermodynamic Properties and Compositional Data
strip Calculate and Plot Relative Abundances of Species
subcrt Properties of Species and Reactions

-- T --

thermo Thermodynamic Properties and Compositional Data
thermo.axis Utility and Miscellaneous Functions
thermo.plot.new Utility and Miscellaneous Functions
thermo.postscript Utility and Miscellaneous Functions
TP.args Utility and Miscellaneous Functions
transfer Mass Transfer Calculations
Ttr Utility and Miscellaneous Functions

-- U --

unitize Utility and Miscellaneous Functions
utilities Utility and Miscellaneous Functions

-- W --

water Properties of Water
water.AW90 Properties of Water
water.IAPWS95 Properties of Water
water.lines Utility and Miscellaneous Functions
water.SUPCRT92 Properties of Water
water.WP02 Properties of Water
where.extreme Diversity Calculations for Chemical Species
which.balance Utility and Miscellaneous Functions
which.pmax Utility and Miscellaneous Functions
write.supcrt Properties of Species and Reactions

-- Y --

yeastgfp Amino Acid Compositions of Collections of Proteins

-- Z --

ZC Utility and Miscellaneous Functions