Calculation of Gst and D values characterizing the genetic differentiation between populations.


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Documentation for package ‘DEMEtics’ version 0.8.0

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all.pops.D Genetic Differentiation Averaged Over all Populations
all.pops.Dest Genetic Differentiation Averaged Over all Populations
all.pops.Dest.Chao Genetic Differentiation Averaged Over all Populations
all.pops.Gst Genetic Differentiation Averaged Over all Populations
all.pops.Gst.est Genetic Differentiation Averaged Over all Populations
allelefreq Calculation of Allele Frequencies and Sample Sizes per Locus
Bootstrapping.Chao Resampling of Alleles or Genotypes Using a Bootstrap Method
Bootstrapping.D Resampling of Alleles or Genotypes Using a Bootstrap Method
Bootstrapping.Dest Resampling of Alleles or Genotypes Using a Bootstrap Method
Bootstrapping.Gst Resampling of Alleles or Genotypes Using a Bootstrap Method
Bootstrapping.Gst.est Resampling of Alleles or Genotypes Using a Bootstrap Method
D D and Dest - Differentiation Indices
D.calc Genetic Differentiation - For Each Locus Separately and Averaged Over all Loci
DEMEtics Calculation of Gst and D values characterizing the genetic differentiation between populations.
Dest D and Dest - Differentiation Indices
Dest.calc Genetic Differentiation - For Each Locus Separately and Averaged Over all Loci
Dest.Chao A Measure of Genetic Differentiation
Dest.Chao.calc A Measure of Genetic Differentiation Calculated From Allele Frequencies
Example.transformed Allelic Data of Three Populations For Three Loci
Example.untransformed Allelic Data of Three Populations for Three Loci
Gst Gst and Gst.est - Fixation Indices
Gst.calc Genetic Differentiation - For Each Locus Separately and Averaged Over all Loci
Gst.est Gst and Gst.est - Fixation Indices
Gst.est.calc Genetic Differentiation - For Each Locus Separately and Averaged Over all Loci
H.out Heterozygosities
Hardy.Weinberg Test for Hardy Weinberg Equilibrium (HWE)
Hj Heterozygosity Level Within a Single Population
Hs Mean Heterozygosity within Populations
Ht Total Heterozygosity
inputformat Transformation of a Data Table Containing Allelic Data for Several Loci
p.val Bootstrap Test of Significance
p.value.correcture Pairwise Genetic Differentiation
pair.pops.D Pairwise Genetic Differentiation
pair.pops.Dest Pairwise Genetic Differentiation
pair.pops.Dest.Chao Pairwise Genetic Differentiation
pair.pops.Gst Pairwise Genetic Differentiation
pair.pops.Gst.est Pairwise Genetic Differentiation