Detection of structure from multilocus genetic data.


[Up] [Top]

Documentation for package ‘Geneland’ version 3.1.5

Help Pages

Geneland-package Simulation and inference for subdivided populations
coordinates Example of coordinate file
EstimateFreqNA Estimate frequencies of null alleles.
FormatGenotypes Formatting file of genotype data.
Fstat Computes F statistics on a population genetics dataset given as R object
Fstat.output Computes F statistics on the output of an inference by MCMC simulation
Geneland Simulation and inference for subdivided populations
Geneland.GUI Graphical interface for package Geneland
genotypes Example of coordinate file
gl2gp Geneland to Genepop conversion
MCMC Markov Chain Monte-Carlo inference under various models
nullify Simulates null alleles
PlotDrift Plot the drift factors
PlotFreq Plot the trace of allele frequencies in present time population and optionnaly print it.
PlotFreqA Plots allele frequencies in ancestral population along the MCMC run and optionally prints it
Plotnpop Plot of number of populations along the MCMC run
Plotntile Plot of number of tiles along the MCMC run
PlotTessellation Maps of posterior probability of membership
PosteriorMode Map of mode of posterior distribution of population membership
PostProcessChain Computation for maps of posterior probability of population membership
PostProcessMultChain Computation for maps of posterior probability of population membership
show.simdata Graphical display of data simulated by simdata
simdata Simulation of georeferenced genotypes under an IBD + barrier model
simFmodel Simulation of multi-locus genetic data from the spatial F-model