Methylation Linear Discriminant Analysis (MLDA)

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Documentation for package ‘MLDA’ version 2.0

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MLDA_2.0-package Methylation Linear Discriminant Analysis (MLDA)
cutoff Determination of log likelihood ratio cut-offs for methylation and unmethylation
cutoff.plot Plot of CR against IR
FDR An internal function
hcgi12k DMH dataset for A2780 series sensitive and resistant cell lines
inconsist An internal function
likelihood An internal function
list.compare List comparison
lr.plot Plot of log likelihood ratios on dye-swapped/duplicated arrays
meth.lm An internal function
middle.lm An internal function
mito.lm An internal function
MLDA Methylation Linear Discriminant Analysis (MLDA)
mlda Methylation Linear Discriminant Analysis
mlda.data Generate a data set in mlda
mlda.sig Identification of differentially methylated loci
mlda.sig.plot Plot of MLDA result
MMR An internal function
Qn An internal function
R2 An internal function
score.cal Weighted Score Scheme
SR An internal function
weight.score An internal function