Tools to analyse RFLP data


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Documentation for package ‘RFLPtools’ version 1.1

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RFLPtools-package Tools to analyse RFLP-data
BLASTdata Example data set for BLAST data
nrBands Function to compute number of bands.
read.blast Read BLAST data
read.rflp Read RFLP data
RFLPdata Example data set for RFLP data
RFLPdist Compute distances for RFLP data.
RFLPdist2 Compute distances for RFLP data.
RFLPdist2ref Compute distance between RFLP data and RFLP reference data.
RFLPplot Function to plot RFLP data.
RFLPqc Quality control for RFLP data
RFLPref Example data set for RFLP reference
RFLPrefplot Function for a visual comparison of RFLP samples with reference samples.
RFLPtools Tools to analyse RFLP-data
sim2dist Convert similarity matrix to dist object.
simMatrix Similarity matrix for BLAST data.
write.hclust Cut a hierarchical cluster tree and write cluster identifiers to a text file.