A Package for Medical Image Analysis (S4 implementation)


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Documentation for package ‘dcemriS4’ version 0.20.2

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A B C D E F G H I K M N O P Q R S T W X misc

-- --

dcemriS4-package dcemri: A Package for Medical Image Analysis (S4 implementation)

-- A --

ADC.fast Estimate the Apparent Diffusion Coefficient (ADC)
ADC.fast-method Estimate the Apparent Diffusion Coefficient (ADC)
adc.lm Estimate the Apparent Diffusion Coefficient (ADC)
aif.orton.exp Arterial Input Functions
anlz Constructor for Analyze
anlz-class Class "anlz"
as-method Force an Object to Belong to the NIfTI Class
as.nifti as.nifti
as<--method Force an Object to Belong to the NIfTI Class
audit.trail Extract or Replace NIfTI Audit Trail
audit.trail-method Extract or Replace NIfTI Audit Trail
audit.trail-methods Extract or Replace NIfTI Audit Trail
audit.trail<- Extract or Replace NIfTI Audit Trail
audit.trail<--method Extract or Replace NIfTI Audit Trail
aux.file Extract or Replace NIfTI/Analyze Auxiliary File
aux.file-method Extract or Replace NIfTI/Analyze Auxiliary File
aux.file-methods Extract or Replace NIfTI/Analyze Auxiliary File
aux.file<- Extract or Replace NIfTI/Analyze Auxiliary File
aux.file<--method Extract or Replace NIfTI/Analyze Auxiliary File

-- B --

breast Simulated Data from Buckley (2002)
buckley Simulated Data from Buckley (2002)

-- C --

CA.fast Estimate Intrinsic Tissue Relaxivity
CA.fast-method Estimate Intrinsic Tissue Relaxivity
CA.fast2 Estimate Intrinsic Tissue Relaxivity
CA.fast2-method Estimate Intrinsic Tissue Relaxivity
coerce-method Force an Object to Belong to the NIfTI Class
coerce-methods Force an Object to Belong to the NIfTI Class
coerce<--method Force an Object to Belong to the NIfTI Class
conv.fft Convolution of 3D Arrays using the Fourier Transform
convert.bitpix Convert NIfTI Codes
convert.datatype Convert NIfTI Codes
convert.datatype.anlz Convert NIfTI Codes
convert.form Convert NIfTI Codes
convert.intent Convert NIfTI Codes
convert.orient.anlz Convert NIfTI Codes
convert.slice Convert NIfTI Codes
convert.units Convert NIfTI Codes

-- D --

dam Double-Angle Method for B1+ Mapping
dcemri.bayes Bayesian Methods for Pharmacokinetic Modeling of Dynamic Contrast-Enhanced MRI Data
dcemri.bayes-method Bayesian Methods for Pharmacokinetic Modeling of Dynamic Contrast-Enhanced MRI Data
dcemri.bayes.single Bayesian Methods for Pharmacokinetic Modeling of Dynamic Contrast-Enhanced MRI Data
dcemri.info Facilitate the Creation and Modification of Audit Trails
dcemri.lm Pharmacokinetic Models for Dynamic Contrast-Enhanced MRI Data
dcemri.lm-method Pharmacokinetic Models for Dynamic Contrast-Enhanced MRI Data
dcemri.map Pharmacokinetic Modeling of Dynamic Contrast-Enhanced MRI Data
dcemri.map-method Pharmacokinetic Modeling of Dynamic Contrast-Enhanced MRI Data
dcemri.map.single Pharmacokinetic Modeling of Dynamic Contrast-Enhanced MRI Data
dcemri.spline Bayesian P-Splines for Dynamic Contrasat-Enhanced MRI Data
dcemri.spline-method Bayesian P-Splines for Dynamic Contrasat-Enhanced MRI Data
dcemri.spline.single Bayesian P-Splines for Dynamic Contrasat-Enhanced MRI Data
dcemriS4 dcemri: A Package for Medical Image Analysis (S4 implementation)
descrip Extract or Replace NIfTI/Analyze Description
descrip-method Extract or Replace NIfTI/Analyze Description
descrip-methods Extract or Replace NIfTI/Analyze Description
descrip<- Extract or Replace NIfTI/Analyze Description
descrip<--method Extract or Replace NIfTI/Analyze Description
dim2freq Bitwise Conversion Subroutines
dim2phase Bitwise Conversion Subroutines
dim2slice Bitwise Conversion Subroutines

-- E --

E10.lm Estimate Intrinsic Tissue Relaxivity
enableAuditTrail Facilitate the Creation and Modification of Audit Trails
extract.aif Seed Growing for a 4D Array

-- F --

find.center Find the Center of a Binary Mask
ftm Fast Template Matching via Cross-Correlation
ftm-method Fast Template Matching via Cross-Correlation

-- G --

getLastCallWithName Facilitate the Creation and Modification of Audit Trails

-- H --

hotmetal Hot Metal Color Table

-- I --

image-method Methods for Function 'image' in Package 'dcemri'
image-methods Methods for Function 'image' in Package 'dcemri'
image.nifti Methods for Function 'image' in Package 'dcemri'
integerTranslation integerTranslation
inverseReorient reorient
invertIntegerTranslation integerTranslation
is.anlz Constructor for Analyze
is.nifti Constructor for NIfTI

-- K --

kineticModel Pharmacokinetic Models

-- M --

meningioma Simulated Data from Buckley (2002)
model.orton.exp Arterial Input Functions

-- N --

newAuditTrail Facilitate the Creation and Modification of Audit Trails
nifti Constructor for NIfTI
nifti-class Class "nifti"
niftiAuditTrail-class Class "niftiAuditTrail"
niftiAuditTrailCreated Facilitate the Creation and Modification of Audit Trails
niftiAuditTrailEvent Facilitate the Creation and Modification of Audit Trails
niftiAuditTrailSystemNode Facilitate the Creation and Modification of Audit Trails
niftiAuditTrailSystemNodeEvent Facilitate the Creation and Modification of Audit Trails
niftiAuditTrailToExtension Facilitate the Creation and Modification of Audit Trails
niftiExtension-class Class "niftiExtension"
niftiExtensionSection-class Class "niftiExtensionSection"
niftiExtensionToAuditTrail Facilitate the Creation and Modification of Audit Trails
NSLI Dimension Accessor Functions
nsli Dimension Accessor Functions
NTIM Dimension Accessor Functions
ntim Dimension Accessor Functions

-- O --

orthographic Methods for Function 'orthographic' in Package 'dcemri'
orthographic-method Methods for Function 'orthographic' in Package 'dcemri'
orthographic-methods Methods for Function 'orthographic' in Package 'dcemri'
orthographic.nifti Methods for Function 'orthographic' in Package 'dcemri'
orton.exp.lm Arterial Input Functions
overlay Methods for Function overlay
overlay-method Methods for Function overlay
overlay-methods Methods for Function overlay
overlay.nifti Methods for Function overlay

-- P --

performPermutation performPermutation

-- Q --

quaternion2rotation Convert Quaternion into a Rotation Matrix

-- R --

R1.fast Estimate Intrinsic Tissue Relaxivity
R1.fast-method Estimate Intrinsic Tissue Relaxivity
R10.lm Estimate Intrinsic Tissue Relaxivity
read.analyze.content readANALYZE
read.nifti.content readNIfTI
readANALYZE readANALYZE
readNIfTI readNIfTI
reorient reorient

-- S --

shift3D Shift a 3D Array in One Dimension
show-method Class "anlz"
show-method Class "nifti"

-- T --

tim.colors Tim's Useful Color Table
translateCoordinate translateCoordinate

-- W --

writeANALYZE writeANALYZE
writeNIfTI writeNIfTI

-- X --

xyzt2space Bitwise Conversion Subroutines
xyzt2time Bitwise Conversion Subroutines

-- misc --

[<--method ~~ Methods for Function [<- in Package 'base' ~~
[<--methods ~~ Methods for Function [<- in Package 'base' ~~