Data Cloning and MCMC Tools for Maximum Likelihood Methods


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Documentation for package ‘dclone’ version 1.0-0

Help Pages

dclone-package Data Cloning
as.mcmc.list.bugs Fit JAGS/BUGS models with cloned data
as.mcmc.list.dc Functions and methods for the 'mcmc.list' class
bugs.fit Fit JAGS/BUGS models with cloned data
clean.jags.model Write and remove model file
coef.mcmc.list Functions and methods for the 'mcmc.list' class
confint.mcmc.list.dc Functions and methods for the 'mcmc.list' class
dc.fit Iterative model fitting with data cloning
dcdim Cloning R objects
dclone Cloning R objects
dclone.dcdim Cloning R objects
dclone.default Cloning R objects
dclone.list Cloning R objects
dclone.ts Cloning R objects
dcsd Functions and methods for the 'mcmc.list' class
dctable Retrieve descriptive statistics from fitted objects to evaluate convergence
dctable.default Retrieve descriptive statistics from fitted objects to evaluate convergence
errlines Plot error bars
errlines.default Plot error bars
extractdctable Retrieve descriptive statistics from fitted objects to evaluate convergence
extractdctable.default Retrieve descriptive statistics from fitted objects to evaluate convergence
jags.fit Fit JAGS/BUGS models with cloned data
make.symmetric Make a square matrix symmetric by averaging.
mcmcapply Calculations on 'mcmc.list' objects
nclones Number of Clones
nclones.default Number of Clones
nclones.list Number of Clones
ovenbird Abundances of ovenbird in Alberta
plot.dctable Retrieve descriptive statistics from fitted objects to evaluate convergence
quantile.mcmc.list Functions and methods for the 'mcmc.list' class
regmod Exemplary MCMC list object
vcov.mcmc.list.dc Functions and methods for the 'mcmc.list' class
write.jags.model Write and remove model file