Dive analysis and calibration


[Up] [Top]

Documentation for package ‘diveMove’ version 0.9.7

Help Pages

diveMove-package Dive Analysis and Calibration
as.data.frame-method Coerce, Extractor, and Replacement methods for class "TDR" objects
as.TDRspeed Coerce, Extractor, and Replacement methods for class "TDR" objects
as.TDRspeed-method Coerce, Extractor, and Replacement methods for class "TDR" objects
austFilter Filter satellite locations
bec2 Methods for Plotting and Extracting the Bout Ending Criterion
bec2-method Methods for Plotting and Extracting the Bout Ending Criterion
bout-methods Methods for Plotting and Extracting the Bout Ending Criterion
boutfreqs Fit a Broken Stick Model on Log Frequency Data for identification of bouts of behaviour
boutinit Fit a Broken Stick Model on Log Frequency Data for identification of bouts of behaviour
bouts.mle Maximum Likelihood Model of mixture of 2 Poisson Processes
bouts2.LL Maximum Likelihood Model of mixture of 2 Poisson Processes
bouts2.ll Maximum Likelihood Model of mixture of 2 Poisson Processes
bouts2.mleBEC Maximum Likelihood Model of mixture of 2 Poisson Processes
bouts2.mleFUN Maximum Likelihood Model of mixture of 2 Poisson Processes
bouts2.nls Fit mixture of 2 Poisson Processes to Log Frequency data
bouts2.nlsBEC Fit mixture of 2 Poisson Processes to Log Frequency data
bouts2.nlsFUN Fit mixture of 2 Poisson Processes to Log Frequency data
calibrateDepth Calibrate Depth and Generate a "TDRcalibrate" object
calibrateSpeed Calibrate and build a "TDRcalibrate" object
ccData<- Coerce, Extractor, and Replacement methods for class "TDR" objects
ccData<--method Coerce, Extractor, and Replacement methods for class "TDR" objects
coerce-method Coerce, Extractor, and Replacement methods for class "TDR" objects
createTDR Read comma-delimited file with "TDR" data
depth<- Coerce, Extractor, and Replacement methods for class "TDR" objects
depth<--method Coerce, Extractor, and Replacement methods for class "TDR" objects
distSpeed Calculate distance and speed between locations
diveMove Dive Analysis and Calibration
dives Sample of TDR data from a fur seal
divesSummary Sample of TDR data from a fur seal
diveStats Per-dive statistics
divesTDR Sample of TDR data from a fur seal
divesTDRcalibrate Sample of TDR data from a fur seal
extractDive Extract Dives from "TDR" or "TDRcalibrate" Objects
extractDive-method Extract Dives from "TDR" or "TDRcalibrate" Objects
extractDive-methods Extract Dives from "TDR" or "TDRcalibrate" Objects
getCCData Coerce, Extractor, and Replacement methods for class "TDR" objects
getCCData-method Coerce, Extractor, and Replacement methods for class "TDR" objects
getDAct Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getDAct-method Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getDepth Coerce, Extractor, and Replacement methods for class "TDR" objects
getDepth-method Coerce, Extractor, and Replacement methods for class "TDR" objects
getDPhaseLab Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getDPhaseLab-method Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getDtime Coerce, Extractor, and Replacement methods for class "TDR" objects
getDtime-method Coerce, Extractor, and Replacement methods for class "TDR" objects
getFileName Coerce, Extractor, and Replacement methods for class "TDR" objects
getFileName-method Coerce, Extractor, and Replacement methods for class "TDR" objects
getGAct Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getGAct-method Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getSpeed Coerce, Extractor, and Replacement methods for class "TDR" objects
getSpeed-method Coerce, Extractor, and Replacement methods for class "TDR" objects
getSpeedCoef Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getSpeedCoef-method Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getTDR Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getTDR-method Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
getTime Coerce, Extractor, and Replacement methods for class "TDR" objects
getTime-method Coerce, Extractor, and Replacement methods for class "TDR" objects
grpSpeedFilter Filter satellite locations
labelBouts Fit a Broken Stick Model on Log Frequency Data for identification of bouts of behaviour
logit Fit a Broken Stick Model on Log Frequency Data for identification of bouts of behaviour
oneDiveStats Per-dive statistics
plotBouts Methods for Plotting and Extracting the Bout Ending Criterion
plotBouts-method Methods for Plotting and Extracting the Bout Ending Criterion
plotBouts2.cdf Maximum Likelihood Model of mixture of 2 Poisson Processes
plotBouts2.mle Maximum Likelihood Model of mixture of 2 Poisson Processes
plotBouts2.nls Fit mixture of 2 Poisson Processes to Log Frequency data
plotTD Interactive zero-offset correction of "TDR" data
plotTDR Methods for plotting objects of class "TDR", "TDRspeed", and "TDRcalibrate"
plotTDR-method Methods for plotting objects of class "TDR", "TDRspeed", and "TDRcalibrate"
plotTDR-methods Methods for plotting objects of class "TDR", "TDRspeed", and "TDRcalibrate"
readLocs Read comma-delimited file with location data
readTDR Read comma-delimited file with "TDR" data
rmsDistFilter Filter satellite locations
rqPlot Plot of quantile regression for speed calibrations
sealLocs Ringed and Gray Seal ARGOS Satellite Location Data
show-method Coerce, Extractor, and Replacement methods for class "TDR" objects
show-method Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
speed<- Coerce, Extractor, and Replacement methods for class "TDR" objects
speed<--method Coerce, Extractor, and Replacement methods for class "TDR" objects
stampDive Per-dive statistics
TDR Classes "TDR" and "TDRspeed" for representing TDR information
TDR-accessors Coerce, Extractor, and Replacement methods for class "TDR" objects
TDR-class Classes "TDR" and "TDRspeed" for representing TDR information
TDR-methods Coerce, Extractor, and Replacement methods for class "TDR" objects
TDRcalibrate Class "TDRcalibrate" for dive analysis
TDRcalibrate-accessors Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
TDRcalibrate-class Class "TDRcalibrate" for dive analysis
TDRcalibrate-methods Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
TDRspeed Classes "TDR" and "TDRspeed" for representing TDR information
TDRspeed-class Classes "TDR" and "TDRspeed" for representing TDR information
timeBudget Describe the Time Budget of Major Activities from "TDRcalibrate" object.
timeBudget-method Describe the Time Budget of Major Activities from "TDRcalibrate" object.
unLogit Fit a Broken Stick Model on Log Frequency Data for identification of bouts of behaviour
zoc Interactive zero-offset correction of "TDR" data
[-method Coerce, Extractor, and Replacement methods for class "TDR" objects