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| geiger-package | GEIGER |
| area.between.curves | Area between two curves |
| BDsim | Birth-death population simulator |
| birthdeath.tree | Birth-death tree simulator |
| crown.limits | Calculate net diversification rate with confindence limits, and test diversities |
| crown.p | Calculate net diversification rate with confindence limits, and test diversities |
| deltaTree | Tree transformations |
| disp.calc | Disparity-through-time |
| dtt | Disparity-through-time |
| dtt.full | Disparity-through-time |
| exponentialchangeTree | Tree transformations |
| fitContinuous | Model fitting for continuous data |
| fitDiscrete | Model fitting for discrete comparative data |
| geiger | GEIGER |
| geospiza | Data from Darwin's finches |
| getAncStates | Estimate ancestral character states for continuous characters |
| ic.sigma | Estimate Evolutionary VCV Matrix |
| kappaTree | Tree transformations |
| lambdaTree | Tree transformations |
| linearchangeTree | Tree transformations |
| name.check | Compares taxa in data and tree |
| node.leaves | Returns all descendents of a given node in your tree |
| ouTree | Tree transformations |
| phy.anova | Phylogenetic ANOVA and MANOVA |
| phy.manova | Phylogenetic ANOVA and MANOVA |
| prune.extinct.taxa | Prune specified taxa from a phylogenetic tree |
| prune.random.taxa | Prune specified taxa from a phylogenetic tree |
| rate.estimate | Calculate net diversification rate with confindence limits, and test diversities |
| rc | Relative cladogenesis test |
| rescaleTree | Tree transformations |
| runMedusa | MEDUSA: Modeling evolutionary diversification using stepwise AIC |
| sim.char | Simulate character evolution |
| speciationalTree | Tree transformations |
| stem.limits | Calculate net diversification rate with confindence limits, and test diversities |
| stem.p | Calculate net diversification rate with confindence limits, and test diversities |
| summaryMedusa | MEDUSA: Modeling evolutionary diversification using stepwise AIC |
| tip.disparity | Tip disparity calculation |
| treedata | Compares taxa in data and tree |
| tworateTree | Tree transformations |