Estimation and tests of hierarchical F-statistics


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Documentation for package ‘hierfstat’ version 0.04-4

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boot.vc Bootstrap confidence intervals for variance components
exhier Example data set with 4 levels, one diploid and one haploid locus
g.stats Calculates likelihood-ratio G-statistic on contingency table
g.stats.glob Likelihood ratio G-statistic over loci
genot2al Separates diploid genotypes in its constituant alleles
gtrunchier Genotypes at 6 microsatellite loci of Galba truncatula from different patches in Western Switzerland
hierfstat General information on the hierfstat package
prepdata Sort and renumber and recode levels for the hierarchical analysis if necessary
read.fstat.data Reads data from a FSTAT file
samp.between Shuffles a sequence among groups defined by the input vector
samp.between.within Shuffles a sequence
samp.within Shuffles a sequence within groups defined by the input vector
test.between Tests the significance of the effect of test.lev on genetic differentiation
test.between.within Tests the significance of the effect of test.lev on genetic differentiation
test.g Tests the significance of the effect of level on genetic differentiation
test.within Tests the significance of the effect of inner.level on genetic differentiation within blocks defined by outer.level
varcomp Estimates variance components for each allele of a locus
varcomp.glob Estimate variance components and hierarchical F-statistics over all loci
yangex Example data set from Yang (1998) appendix