Interface for hyperspectral data sets, i.e. spectra + meta information (spatial, time, concentration, ...)


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Documentation for package ‘hyperSpec’ version 0.95

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A B C D E F G H I L M N O P R S T V W misc

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hyperSpec-package Interface for hyperspectral data sets, i.e. spectra + meta information (spatial, time, concentration, ...)

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!=-method Comparison Operators: <, >, <=, >=, ==, and !=
$-method Extract and Replace Methods for hyperSpec
$<--method Extract and Replace Methods for hyperSpec
%%-method Arithmetical Operators: +, -, *, /, ^, %%, %/%, %*%
%*% Arithmetical Operators: +, -, *, /, ^, %%, %/%, %*%
%*%-method Arithmetical Operators: +, -, *, /, ^, %%, %/%, %*%
%/%-method Arithmetical Operators: +, -, *, /, ^, %%, %/%, %*%
*-method Arithmetical Operators: +, -, *, /, ^, %%, %/%, %*%
+-method Arithmetical Operators: +, -, *, /, ^, %%, %/%, %*%
--method Arithmetical Operators: +, -, *, /, ^, %%, %/%, %*%
/-method Arithmetical Operators: +, -, *, /, ^, %%, %/%, %*%
<-method Comparison Operators: <, >, <=, >=, ==, and !=
<=-method Comparison Operators: <, >, <=, >=, ==, and !=
==-method Comparison Operators: <, >, <=, >=, ==, and !=
>-method Comparison Operators: <, >, <=, >=, ==, and !=
>=-method Comparison Operators: <, >, <=, >=, ==, and !=

-- A --

abs-method Math Functions for hyperSpec Objects
acos-method Math Functions for hyperSpec Objects
acosh-method Math Functions for hyperSpec Objects
aggregate-method aggregate
all-method Math Functions for hyperSpec Objects
all.equal-method Comparison Operators: <, >, <=, >=, ==, and !=
any-method Math Functions for hyperSpec Objects
apply-method apply
Arith-method Arithmetical Operators: +, -, *, /, ^, %%, %/%, %*%
array2df array2df: Convert multidimensional array into matrix or data.frame
array2vec Converting array and vector Indices
as.character-method Convert a hyerSpec object to character strings for Display
as.data.frame Conversion of a hyperSpec object into a data.frame or matrix
as.data.frame-method Conversion of a hyperSpec object into a data.frame or matrix
as.data.frame-methods Conversion of a hyperSpec object into a data.frame or matrix
as.long.df Conversion of a hyperSpec object into a data.frame or matrix
as.matrix Conversion of a hyperSpec object into a data.frame or matrix
as.matrix-method Conversion of a hyperSpec object into a data.frame or matrix
as.matrix-methods Conversion of a hyperSpec object into a data.frame or matrix
asin-method Math Functions for hyperSpec Objects
asinh-method Math Functions for hyperSpec Objects
atan-method Math Functions for hyperSpec Objects
atanh-method Math Functions for hyperSpec Objects
ave-method aggregate

-- B --

bind Binding hyperSpec Objects

-- C --

cbind.hyperSpec Binding hyperSpec Objects
cbind2-method Binding hyperSpec Objects
ceiling-method Math Functions for hyperSpec Objects
chondro Raman spectra of 2 Chondrocytes in Cartilage
colnames-method Dimnames of an hyperSpec Object
colnames<--method Dimnames of an hyperSpec Object
Compare-method Comparison Operators: <, >, <=, >=, ==, and !=
cos-method Math Functions for hyperSpec Objects
cosh-method Math Functions for hyperSpec Objects
cummax-method Math Functions for hyperSpec Objects
cummin-method Math Functions for hyperSpec Objects
cumprod-method Math Functions for hyperSpec Objects
cumsum-method Math Functions for hyperSpec Objects

-- D --

decomposition Convert Principal Component Decomposition or the like into a hyperSpec Object
digamma-method Math Functions for hyperSpec Objects
dim-method The Number of Rows (Spectra), Columns, and Data Points per Spectrum of an hyperSpec Object)
dimnames-method Dimnames of an hyperSpec Object

-- E --

exp-method Math Functions for hyperSpec Objects
expm1-method Math Functions for hyperSpec Objects
export Import and Export of hyperSpec objects

-- F --

floor-method Math Functions for hyperSpec Objects
flu Chitin Fluorescence Spectra

-- G --

gamma-method Math Functions for hyperSpec Objects

-- H --

hyperSpec Interface for hyperspectral data sets
hyperSpec Arith Arithmetical Operators: +, -, *, /, ^, %%, %/%, %*%
hyperSpec compare Comparison Operators: <, >, <=, >=, ==, and !=
hyperSpec Comparison Comparison Operators: <, >, <=, >=, ==, and !=
hyperSpec Comparison Operators Comparison Operators: <, >, <=, >=, ==, and !=
hyperSpec Math Math Functions for hyperSpec Objects
hyperSpec Math2 Math Functions for hyperSpec Objects
hyperSpec Summary Math Functions for hyperSpec Objects
hyperSpec-class Class "hyperSpec"

-- I --

i2wl Conversion between Wavelength and Spectra Matrix Column Index
import Import and Export of hyperSpec objects
index.grid index.grid: Calculate a Matrix with Indices for x,y-Data
initialize-method Creating a hyperSpec Object

-- L --

labels-method Get and Set Labels of a hyperSpec Object
labels<- Get and Set Labels of a hyperSpec Object
laser Laser Emission
lgamma-method Math Functions for hyperSpec Objects
log-method Math Functions for hyperSpec Objects
log1p-method Math Functions for hyperSpec Objects
logbook Logging the processing ot a hyperSpec Object
logentry Append a Row to the log of a hyperSpec Object

-- M --

map.identify Plot a Map and Identify Spectra
Math-method Math Functions for hyperSpec Objects
Math2-method Math Functions for hyperSpec Objects
matlab.dark.palette Matlab-like Palettes
matlab.palette Matlab-like Palettes
max-method Math Functions for hyperSpec Objects
mean_pm_sd Mean and Standard Deviation
mean_sd Mean and Standard Deviation
min-method Math Functions for hyperSpec Objects

-- N --

ncol-method The Number of Rows (Spectra), Columns, and Data Points per Spectrum of an hyperSpec Object)
nrow-method The Number of Rows (Spectra), Columns, and Data Points per Spectrum of an hyperSpec Object)
nwl The Number of Rows (Spectra), Columns, and Data Points per Spectrum of an hyperSpec Object)

-- O --

orderwl Sorting the Wavelengths of a hyperSpec Object

-- P --

pearson.dist Calculate Distance based on Pearson's R\^2
plot Plotting hyperSpec Objects
plot-method Plotting hyperSpec Objects
plotc Calibration- and Timeseries Plots, Depth-Profiles and the like
plotmap Plot a Map and Identify Spectra
plotspc Plotting Spectra
print-method Convert a hyerSpec object to character strings for Display
prod-method Math Functions for hyperSpec Objects

-- R --

range-method Math Functions for hyperSpec Objects
rbind.hyperSpec Binding hyperSpec Objects
rbind2-method Binding hyperSpec Objects
read.ENVI Import of ENVI data as hyperSpec object
read.txt.long Import and Export of hyperSpec objects
read.txt.wide Import and Export of hyperSpec objects
round-method Math Functions for hyperSpec Objects
rownames-method Dimnames of an hyperSpec Object
rownames<--method Dimnames of an hyperSpec Object

-- S --

scan.txt.Renishaw import Raman measurements from Renishaw ASCII-files
show-method Convert a hyerSpec object to character strings for Display
sign-method Math Functions for hyperSpec Objects
signif-method Math Functions for hyperSpec Objects
sin-method Math Functions for hyperSpec Objects
sinh-method Math Functions for hyperSpec Objects
spc.bin Wavelength Binning
spc.fit.poly Polynomial Baseline Fitting
spc.fit.poly.below Polynomial Baseline Fitting
spc.identify Identifying Spectra and Spectral Data Points
spc.loess loess smoothing interpolation for spectra
split Split a hyperSpec object into groups
split-method Split a hyperSpec object into groups
split-methods Split a hyperSpec object into groups
sqrt-method Math Functions for hyperSpec Objects
stacked.offsets y Offsets for Stacked Plots
sum-method Math Functions for hyperSpec Objects
Summary-method Math Functions for hyperSpec Objects
summary-method Convert a hyerSpec object to character strings for Display
sweep Sweep Summary Statistic out of an hyperSpec Object
sweep-method Sweep Summary Statistic out of an hyperSpec Object
sweep-methods Sweep Summary Statistic out of an hyperSpec Object

-- T --

tan-method Math Functions for hyperSpec Objects
tanh-method Math Functions for hyperSpec Objects
tapply-method aggregate
trigamma-method Math Functions for hyperSpec Objects
trunc-method Math Functions for hyperSpec Objects

-- V --

vec2array Converting array and vector Indices

-- W --

wc wc
wl Getting and Setting the Wavelength Axis
wl2i Conversion between Wavelength and Spectra Matrix Column Index
wl<- Getting and Setting the Wavelength Axis
write.txt.long Import and Export of hyperSpec objects
write.txt.wide Import and Export of hyperSpec objects

-- misc --

[-method Extract and Replace Methods for hyperSpec
[<--method Extract and Replace Methods for hyperSpec
[[-method Extract and Replace Methods for hyperSpec
[[<--method Extract and Replace Methods for hyperSpec
^-method Arithmetical Operators: +, -, *, /, ^, %%, %/%, %*%