%*% | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
%*%-method | Class "bdsmatrix" |
%*%-method | Class "gchol.bdsmatrix" |
%*%-method | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
%*%-methods | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
%*%.bdsmatrix | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
%*%.default | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
%*%.gchol.bdsmatrix | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
align.pedigree | Generate plotting information for a pedigree |
alignped1 | Generate plotting information for a pedigree |
alignped2 | Generate plotting information for a pedigree |
alignped3 | Generate plotting information for a pedigree |
alignped4 | Generate plotting information for a pedigree |
all-method | Class "bdsmatrix" |
any-method | Class "bdsmatrix" |
as.matrix.bdsmatrix | a function for bdsmatrix |
as.matrix.gchol | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
as.matrix.gchol.bdsmatrix | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
as.vector.bdsmatrix | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
autohint | Align a pedigree to print well |
bdsBlock | Block diagonal matrices. |
bdsI | Sparse identity matrices |
bdsmatrix | Create a sparse symmetric block diagonal matrix object |
bdsmatrix-class | Class "bdsmatrix" |
bdsmatrix.ibd | Create a bdsmatrix from a list |
bdsmatrix.reconcile | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
besthint | Create a hints matrix for a pedigree. |
coerce-method | Class "bdsmatrix" |
coerce-method | Class "gchol" |
coerce-method | Class "gchol.bdsmatrix" |
coxme | Fit a mixed-effects Cox model |
coxme.control | Control parameters for coxme |
coxme.fit | Fit a mixed-effects Cox model |
coxme.varcheck | Fit a mixed-effects Cox model |
diag-method | Class "bdsmatrix" |
diag-method | Class "gchol" |
diag-method | Class "gchol.bdsmatrix" |
diag<--method | Class "bdsmatrix" |
dim-method | Class "bdsmatrix" |
dim-method | Class "gchol.bdsmatrix" |
dimnames-method | Class "bdsmatrix" |
dimnames<--method | Class "bdsmatrix" |
familycheck | Error check for a family classification |
gchol | Generalized Cholesky decompostion |
gchol-class | Class "gchol" |
gchol-method | Methods for Function gchol in Package 'kinship' |
gchol-methods | Methods for Function gchol in Package 'kinship' |
gchol.bdsmatrix | Generalized Cholesky decompostion |
gchol.bdsmatrix-class | Class "gchol.bdsmatrix" |
getCovariateFormula2 | Linear Mixed Effects model using a kinship matrix. |
getCrossedTerms | Linear Mixed Effects model using a kinship matrix. |
getGroupsFormula2 | Linear Mixed Effects model using a kinship matrix. |
is.bdsmatrix | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
is.gchol.bdsmatrix | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
is.list.bdsmatrix | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
is.list.gchol.bdsmatrix | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
is.matrix.bdsmatrix | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
is.matrix.gchol.bdsmatrix | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |
kindepth | Compute a kinship matrix |
kinship | Compute a kinship matrix |
list or NULL-class | Class "list or NULL" |
lmekin | Linear Mixed Effects model using a kinship matrix. |
makefamid | Identify family groups |
makekinship | Create a sparse kinship matrix |
Math-method | Class "bdsmatrix" |
Math2-method | Class "bdsmatrix" |
max-method | Class "bdsmatrix" |
min-method | Class "bdsmatrix" |
Ops-method | Class "bdsmatrix" |
pedigree | Create pedigree structure |
plot.pedigree | plot pedigrees |
print.bdsmatrix | Create a sparse symmetric block diagonal matrix object |
print.coxme | Fit a mixed-effects Cox model |
print.lmekin | Linear Mixed Effects model using a kinship matrix. |
prod-method | Class "bdsmatrix" |
range-method | Class "bdsmatrix" |
show-method | Class "bdsmatrix" |
show-method | Class "gchol" |
show-method | Class "gchol.bdsmatrix" |
solve.bdsmatrix | Solve a matrix equation using the generalized Cholesky decompostion |
solve.gchol | Solve a matrix equation using the generalized Cholesky decompostion |
solve.gchol.bdsmatrix | function solve for gchol.bdsmatrix |
strata2 | Control parameters for coxme |
sum-method | Class "bdsmatrix" |
unique-method | Class "bdsmatrix" |
[-method | Class "bdsmatrix" |
[-method | Class "gchol.bdsmatrix" |
[.pedigree | Basic Linear Algebra for classes bdsmatrix and gchol.bdsmatrix |