carex |
Carex section Ovales tree, chromosome data, and nodes |
informationCriterion |
Information criterion and weights for a set of models |
informationCriterion.hansenBatch |
Information criterion and weights for a set of models |
isMonophyletic |
Test whether a set of taxa is monophyletic on an ouch-style tree |
mrcaOUCH |
Test whether a set of taxa is monophyletic on an ouch-style tree |
multiModel |
Test multiple models of character transition at a single node |
nodeDescendents |
Test whether a set of taxa is monophyletic on an ouch-style tree |
ouSim |
Discrete-time simulation of Ornstein-Uhlenbeck models on a user tree. |
ouSim.browntree |
Discrete-time simulation of Ornstein-Uhlenbeck models on a user tree. |
ouSim.hansenBatch |
Discrete-time simulation of Ornstein-Uhlenbeck models on a user tree. |
ouSim.hansenSummary |
Discrete-time simulation of Ornstein-Uhlenbeck models on a user tree. |
ouSim.hansentree |
Discrete-time simulation of Ornstein-Uhlenbeck models on a user tree. |
ouSim.ouchtree |
Discrete-time simulation of Ornstein-Uhlenbeck models on a user tree. |
ouSim.phylo |
Discrete-time simulation of Ornstein-Uhlenbeck models on a user tree. |
paintBranches |
Paint branches for Ornstein-Uhlenbeck analysis |
plot.ouSim |
Visualizing discrete-time simulation of Ornstein-Uhlenbeck models. |
print.hansenSummary |
Summarize output from runBatchHansen |
print.informationCriterion |
Information criterion and weights for a set of models |
regimeMaker |
Paint ouch-style regimes over a set of trees based on a user-defined matrix |
regimeMatrix |
Create a matrix that defines models for batch analysis |
regimeVectors |
Paint all possible regimes |
runBatchHansen |
Analyze Ornstein-Uhlenbeck models over a set of trees |
summary.hansenBatch |
Summarize output from runBatchHansen |