Multi-state Path-Dependent Models in Discrete Time


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Documentation for package ‘mspath’ version 0.9-9

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A B C D E F I J L M N O P Q R S T U W

-- A --

activeCases Calculator for Multi-State Path Models
activeCases-method Calculator for Multi-State Path Models
activeCases<- Calculator for Multi-State Path Models
activeCases<--method Calculator for Multi-State Path Models
activeCases<--methods Calculator for Multi-State Path Models
addResult Add a Job Run's Results to the Analyzer
addResult-method Class "runTime"
alldone Distributed Calculation Shut-Down

-- B --

bitMask Class "readingError"
bitMask-method Class "readingError"
boolMask Class "readingError"
boolMask-method Class "readingError"

-- C --

calculate calculate
calculate-method calculate
calculate-methods calculate
checkpoint Checkpointing and progress information
coef-method Results of a multi-state path calculation
coef-method Class "mspathCoefficients"
coef-method mspathEstimatedCoefficients
coef-method Class "readingError"
cpuTime Class "runTime"
cpuTime-method Class "runTime"

-- D --

deltamethod The delta method
done Finished with a Calculator
done-method Finished with a Calculator
done-methods Finished with a Calculator
doTrials Run trials until told to stop

-- E --

e2 Allowed Misclassifications: e2
effort Get measures of effort to perform a calculation
effort-method Get measures of effort to perform a calculation
effort-methods Get measures of effort to perform a calculation
endTime Class "runTime"
endTime-method Class "runTime"
estimateWork Estimate Amount of Work for Computations
estimateWork-method Estimate Amount of Work for Computations
estimateWork-methods Estimate Amount of Work for Computations
expit Inverse logit function

-- F --

fixedSchedule fixedSchedule

-- I --

isAllFixed Test for fixed objects
isAllFixed-method Test for fixed objects
isAllFixed-method Class "mspathCoefficients"
isAllFixed-methods Test for fixed objects

-- J --

job Class "runTime"
job-method Class "runTime"

-- L --

logit Logit function

-- M --

master Start Multi-State Path Model Distributed Calculations on Master Node
matrixCoef Class "mspathCoefficients"
matrixCoef-method Results of a multi-state path calculation
matrixCoef-method Class "mspathCoefficients"
matrixCoef-methods Class "mspathCoefficients"
MatrixExp Matrix exponential
mean-method Class "readingError"
minus2loglik Retrieve Multi-State Path Model Likelihood
minus2loglik-method Retrieve Multi-State Path Model Likelihood
minus2loglik-method Results of a multi-state path calculation
minus2loglik-methods Retrieve Multi-State Path Model Likelihood
mpirank Class "runTime"
mpirank-method Class "runTime"
mpirank<- Class "runTime"
mpirank<--method Class "runTime"
mspath Multi-state Path-Dependent Models
mspath-class Results of a multi-state path calculation
mspath.subset subset a dataset based on estimated work
mspathAbstractCalculator-class Calculator for Multi-State Path Models
mspathCalculator Constructors for mspathCalculator Objects
mspathCalculator-class Calculator for Multi-State Path Models
mspathCalculatorFromArgs Constructors for mspathCalculator Objects
mspathCoefficients Class "mspathCoefficients"
mspathCoefficients-class Class "mspathCoefficients"
mspathDistributedCalculator Constructors for mspathCalculator Objects
mspathDistributedCalculator-class Distributed Calculator for Multi-State Path Models
mspathDistributedCalculatorFactory Make a Constructor for mspathCalculator Objects
mspathEstimatedCoefficients mspathEstimatedCoefficients
mspathEstimatedCoefficients-class mspathEstimatedCoefficients
mspathFull-class Results of a multi-state path calculation

-- N --

nActiveCases Calculator for Multi-State Path Models
nActiveCases-method Calculator for Multi-State Path Models
nActiveCases-methods Calculator for Multi-State Path Models
nBadNodes Results of a multi-state path calculation
nBadNodes-method Results of a multi-state path calculation
nBadNodes-method Calculator for Multi-State Path Models
nBadNodes-methods Results of a multi-state path calculation
nCases Results of a multi-state path calculation
nCases-method Results of a multi-state path calculation
nCases-method Calculator for Multi-State Path Models
nCases-methods Results of a multi-state path calculation
newRun Class to Analyze Runtimes
newRun-method Class to Analyze Runtimes
nGoodNodes Results of a multi-state path calculation
nGoodNodes-method Results of a multi-state path calculation
nGoodNodes-method Calculator for Multi-State Path Models
nGoodNodes-methods Results of a multi-state path calculation
nGoodPathNodes Results of a multi-state path calculation
nGoodPathNodes-method Results of a multi-state path calculation
nGoodPathNodes-method Calculator for Multi-State Path Models
nGoodPathNodes-methods Results of a multi-state path calculation
nGoodPaths Results of a multi-state path calculation
nGoodPaths-method Results of a multi-state path calculation
nGoodPaths-method Calculator for Multi-State Path Models
nGoodPaths-methods Results of a multi-state path calculation

-- O --

optimizeWork Calculator for Multi-State Path Models
optimizeWork-method Calculator for Multi-State Path Models
optimizeWork-methods Calculator for Multi-State Path Models
optresults Results of a multi-state path calculation
optresults-method Results of a multi-state path calculation
optresults-methods Results of a multi-state path calculation
optresults<- Results of a multi-state path calculation
optresults<--method Results of a multi-state path calculation
optresults<--methods Results of a multi-state path calculation

-- P --

params<- Calculator for Multi-State Path Models
params<--method Calculator for Multi-State Path Models
params<--method Distributed Calculator for Multi-State Path Models
params<--methods Calculator for Multi-State Path Models
print-method Results of a multi-state path calculation
print-method Class "mspathCoefficients"
print-method mspathEstimatedCoefficients
printFooter Results of a multi-state path calculation
printFooter-method Results of a multi-state path calculation
printFooter-methods Results of a multi-state path calculation

-- Q --

q2 Allowed Transitions: q2

-- R --

readingError Class "readingError"
readingError-class Class "readingError"
remoteTime<- Class "runTime"
remoteTime<--method Class "runTime"
results Retrieve Results of Multi-State Path Calculation
results-method Retrieve Results of Multi-State Path Calculation
results-methods Retrieve Results of Multi-State Path Calculation
runAnalyzer Class to Analyze Runtimes
runAnalyzer-class Class to Analyze Runtimes
runeverywhere Top Level of Distributed Calculation for Multi-State Path Model
runTime runTime constructor
runTime-class Class "runTime"

-- S --

sd-method Results of a multi-state path calculation
sd-method Class "mspathCoefficients"
sd-method mspathEstimatedCoefficients
show-method Results of a multi-state path calculation
show-method Class "mspathCoefficients"
show-method mspathEstimatedCoefficients
sim1 HCV Progression after liver transplant
sim2 HCV Progression after liver transplant
sim3 HCV Progression after liver transplant
simulateObservations Calculator for Multi-State Path Models
simulateObservations-method Calculator for Multi-State Path Models
simulateObservations-methods Calculator for Multi-State Path Models
slave Prepare for Distributed Multi-State Path Model Computations on Slaves
smoosh Analyze Runtime Estimates and Actual Values
smoosh-method Class to Analyze Runtimes
startTime Class "runTime"
startTime-method Class "runTime"

-- T --

trial Class "trial"
trial-class Class "trial"

-- U --

useActualTimes Calculator for Multi-State Path Models
useActualTimes-method Calculator for Multi-State Path Models
useActualTimes-methods Calculator for Multi-State Path Models

-- W --

waitTime Class "runTime"
waitTime-method Class "runTime"
wallTime Class "runTime"
wallTime-method Class "runTime"