Software for constructing genetic maps in outcrossing species


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Documentation for package ‘onemap’ version 1.0-1

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onemap-package Software for constructing genetic maps in outcrossing species
add.marker Add or Drop Markers From a Sequence
add_drop Add or Drop Markers From a Sequence
compare Compare all possible orders for a given sequence
def.rf.3pts Three-point analysis of genetic markers
drop.marker Add or Drop Markers From a Sequence
example_out Data from a full-sib family derived from two outbred parents
group Assign markers to linkage groups
haldane Mapping functions Haldane and Kosambi
kosambi Mapping functions Haldane and Kosambi
make.seq Create a sequence of markers
map Construct the linkage map for a sequence of markers
map_func Mapping functions Haldane and Kosambi
marker.type Type of segregation of markers
onemap Software for constructing genetic maps in outcrossing species
order.seq Search for the best order of markers combining compare and try.seq functions
print.group Assign markers to linkage groups
print.rf.2pts Two-point analysis between genetic markers
print.try Try to map a marker into every possible position between markers in a given sequence
rcd Rapid Chain Delineation
read.outcross Read data from a segregating full-sib population
rf.2pts Two-point analysis between genetic markers
rf.graph.table Plots a pairwise recombination fraction matrix using a color scale.
ripple Compares and displays plausible alternative orders for a given linkage map
set.map.fun Defines the default mapping function
try.seq Try to map a marker into every possible position between markers in a given sequence