Optimal partitioning of similarity relations

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Documentation for package ‘optpart’ version 2.0-1

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archi Archipelago Analysis
bestopt Best Of Set Optimal Partitions From Random Starts
classmatch Classification Matching and Differencing
clique Maximal Clique Analysis
clique.test Clique Test
clusplot.clustering Bi-variate Clusplot of a Partana Object
clusplot.partana Bi-variate Clusplot of a Partana Object
confus Confusion Matrix
disdiam Dissimilarity Diameters of a Partition
disdiam.clustering Dissimilarity Diameters of a Partition
disdiam.default Dissimilarity Diameters of a Partition
disdiam.partition Dissimilarity Diameters of a Partition
disdiam.stride Dissimilarity Diameters of a Partition
extract Extract A Specific Cluster Solution From A Stride
extract.stride Extract A Specific Cluster Solution From A Stride
fuzconfus Fuzzy Confusion Matrix
isamic Indicator Species Analysis to Minimize Intermediate Constancy
maxpact Maximally Compact Sets Analysis
mps.test Maximally Compact Sets Analysis
murdoch Indicator Species Analysis by Murdoch Preference Function
neighbor Neighbor Analysis of Partitions
optindval Optimizing Classification by Maximizing Dufrene and Legendre's Indicator Value
optpart Optimal Partitioning of Dissimilarity/Distance Matrices
optpart.clustering Optimal Partitioning of Dissimilarity/Distance Matrices
optpart.default Optimal Partitioning of Dissimilarity/Distance Matrices
optpart.partana Optimal Partitioning of Dissimilarity/Distance Matrices
optpart.partition Optimal Partitioning of Dissimilarity/Distance Matrices
optpart.stride Optimal Partitioning of Dissimilarity/Distance Matrices
optsil Clustering by Optimizing Silhouette Widths
optsil.clustering Clustering by Optimizing Silhouette Widths
optsil.default Clustering by Optimizing Silhouette Widths
optsil.partana Clustering by Optimizing Silhouette Widths
optsil.partition Clustering by Optimizing Silhouette Widths
optsil.stride Clustering by Optimizing Silhouette Widths
opttdev Optimizing Classification by Minimizing Table Deviance
partana Partition Analysis
partana.clustering Partition Analysis
partana.default Partition Analysis
partana.partition Partition Analysis
partana.stride Partition Analysis
partition.clustering Partition Analysis
partition.partana Partition Analysis
phi Calculating the phi Statistic on Taxon Classifications
plot.clique Maximal Clique Analysis
plot.mps Plotting Maximally Compact Sets
plot.murdoch Indicator Species Analysis by Murdoch Preference Function
plot.partana Plotting a Partition Analysis
plot.stride Stride: Producing a Sequence of Clusterings
print.disdiam Dissimilarity Diameters of a Partition
refine Refining a Classification by Re-Assigning Memberships
refine.default Refining a Classification by Re-Assigning Memberships
refine.nmds Refining a Classification by Re-Assigning Memberships
refine.pco Refining a Classification by Re-Assigning Memberships
shoshsite Site Data for the Shoshone National Forest, Wyoming, USA
shoshveg Vascular Plant Species Cover for the Shoshone National Forest, Wyoming, USA
silhouette.clustering Produce a Silhouette Object From a Partana or Clustering Object
silhouette.partana Produce a Silhouette Object From a Partana or Clustering Object
silhouette.stride Stride: Producing a Sequence of Clusterings
slice Slice a Hierarchical Clustering Dendrogram with a Mouse
stride Stride: Producing a Sequence of Clusterings
summary.clique Maximal Clique Analysis
summary.murdoch Indicator Species Analysis by Murdoch Preference Function
summary.partana Partition Analysis
summary.tabdev Classification Validity Assessment by Table Deviance
tabdev Classification Validity Assessment by Table Deviance
tabdev.default Classification Validity Assessment by Table Deviance
tabdev.stride Classification Validity Assessment by Table Deviance
testopt Identify Misclassified Plots in an Optpart Classification
testpart Partition Analysis
testsil Produce a Silhouette Object From a Partana or Clustering Object
typal Identification of Typal Samples in a Partition