pegas-package | Population and Evolutionary Genetics Analysis System |
amova | Analysis of Molecular Variance |
as.loci | Conversion Among Allelic Data Classes |
as.loci.character | Conversion Among Allelic Data Classes |
as.loci.data.frame | Conversion Among Allelic Data Classes |
as.loci.factor | Conversion Among Allelic Data Classes |
as.loci.genind | Conversion Among Allelic Data Classes |
bind.loci | Bind Loci Objects |
cbind.loci | Bind Loci Objects |
edit.loci | Edit Allelic Data with R's Data Editor |
expand.genotype | Utily Functions for pegas |
Fst | F-Statistics |
genind2loci | Conversion Among Allelic Data Classes |
getAlleles | Utily Functions for pegas |
getGenotypes | Utily Functions for pegas |
getPloidy | Utily Functions for pegas |
H | Heterozygosity at a Locus Using Gene Frequencies |
haploNet | Haplotype Networks |
haplotype | Haplotype Extraction and Frequencies |
heterozygosity | Heterozygosity at a Locus Using Gene Frequencies |
hw.test | Test of Hardy-Weinberg Equilibrium |
loci2genind | Conversion Among Allelic Data Classes |
MMD | Mismatch Distribution |
nuc.div | Nucleotide Diversity |
pegas | Population and Evolutionary Genetics Analysis System |
plot.haploNet | Haplotype Networks |
plot.haplotype | Haplotype Extraction and Frequencies |
plot.spectrum | Site Frequency Spectrum |
plot.summary.loci | Print and Summaries of Loci Objects |
print.amova | Analysis of Molecular Variance |
print.haplotype | Haplotype Extraction and Frequencies |
print.loci | Print and Summaries of Loci Objects |
print.summary.loci | Print and Summaries of Loci Objects |
R2.test | Ramos-Onsins-Rozas Test of Neutrality |
rbind.loci | Bind Loci Objects |
read.gtx | Read Genetix Data Files |
read.loci | Read Allelic Data Files |
site.spectrum | Site Frequency Spectrum |
summary.loci | Print and Summaries of Loci Objects |
tajima.test | Test of the Neutral Mutation Hypothesis |
theta.h | Population Parameter THETA using Homozygosity |
theta.k | Population Parameter THETA using Expected Number of Alleles |
theta.s | Population Parameter THETA using Segregating Sites |
theta.tree | Population Parameter THETA Using Genealogy |
write.loci | Write Allelic Data Files |
[.loci | Print and Summaries of Loci Objects |