Integrating phylogenetics and climatic niche modelling


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Documentation for package ‘phyloclim’ version 0.0.1

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phyloclim-package Phyloclimatic data analysis
AC.node.trans AC.node.trans
age.range.correlation Age-Range Correlation
anc.clim Estimation of ancestral climatic tolerances
bg.similarity.test Niche equivalency and background similarity test
descendants descendants
equ Niche overlap for Oxalis adenophylla and O. arenaria
getDI getDI
nbConnectingNodes nbConnectingNodes
nested.mean.overlap nested.mean.overlap
niche.equivalency.test Niche equivalency and background similarity test
niche.overlap Quantification of niche overlap
noi noi
palmatifoliae_pno PNOs for Oxalis sect. Palmatifoliae
palmatifoliae_tree Phylogeny of Oxalis sect. Palmatifoliae
phyloclim Phyloclimatic data analysis
plotAncClim Chronograms with climatic data on the y-axis
plotBackgroundSimilarity Visualize results of niche equivalency and background similarity tests.
plotNicheEquivalency Visualize results of niche equivalency and background similarity tests.
plotPNO Plot Predicted Niche Occupancy Profiles
pno Predicted niche occupancy profiles
pno.weighted.mean Weighted means of niche dimensions
sim Niche overlap for Oxalis adenophylla and O. arenaria
sister sister
terminal.sisters terminal.sisters