A C D E F I L M N O P R S T U V W X
secr-package | Spatially Explicit Capture-Recapture Models |
AIC.secr | Compare SECR Models |
animalID | Dissect Spatial Capture History Object |
attenuationplot | Plot Detection Functions |
autoini | Initial Parameter Values for SECR |
captdata | Detection Dataset |
capthist | Spatial Capture History Object |
captXY | Demonstration Data |
coef.secr | Coefficients of secr Object |
collate | Model averaging for SECR Models |
confint.secr | Profile Likelihood Confidence Intervals |
counts | Summarise Detections |
covariates | Covariates Attribute |
covariates<- | Covariates Attribute |
D.designdata | Construct Density Design Data |
dbar | Home Range Statistics |
derived | Derived Parameters of Fitted SECR Model |
detectfnplot | Plot Detection Functions |
detection functions | Detection Functions |
detector | Detector Type |
detector<- | Detector Type |
deviance | Deviance of fitted secr model and residual degrees of freedom |
deviance.secr | Deviance of fitted secr model and residual degrees of freedom |
df.residual | Deviance of fitted secr model and residual degrees of freedom |
df.residual.secr | Deviance of fitted secr model and residual degrees of freedom |
distancetotrap | Distance To Nearest Detector |
ellipse.secr | Confidence ellipse |
esa | Derived Parameters of Fitted SECR Model |
FAQ | Frequently Asked Questions, And Others |
flip | Flip Points |
flip.traps | Flip Detector Array |
invlogit | Logit Transformation |
ip.secr | Spatially Explicit Capture-Recapture by Inverse Prediction |
LLsurface.secr | Plot likelihood surface |
logit | Logit Transformation |
LR.test | Likelihood Ratio Test for SECR Models |
make.capthist | Construct capthist Object |
make.circle | Build Detector Array |
make.grid | Build Detector Array |
make.mask | Build Habitat Mask |
make.poly | Build Detector Array |
make.transect | Build Detector Array |
mask | Mask Object |
model.average | Model averaging for SECR Models |
MS.capthist | Combine capthist Objects |
nearesttrap | Distance To Nearest Detector |
occasion | Dissect Spatial Capture History Object |
ovenbird | Ovenbird Mist-netting Dataset |
ovenbird.model.1 | Ovenbird Mist-netting Dataset |
ovenbird.model.1b | Ovenbird Mist-netting Dataset |
ovenCH | Ovenbird Mist-netting Dataset |
ovensong | Ovenbird Acoustic Dataset |
pdot | Net Detection Probability |
pfn | Spatially Explicit Capture-Recapture by Inverse Prediction |
plot.capthist | Plot Detection Histories |
plot.mask | Plot Habitat Mask |
plot.popn | Plot popn Object |
plot.secr | Plot Detection Functions |
plot.traps | Plot traps Object |
polyID | Detector Attributes |
polyID<- | Detector Attributes |
popn | Population Object |
possum | Brushtail Possum Trapping Dataset |
possum.model.1 | Brushtail Possum Trapping Dataset |
possum.model.1b | Brushtail Possum Trapping Dataset |
possumCH | Brushtail Possum Trapping Dataset |
possummask | Brushtail Possum Trapping Dataset |
predict.secr | SECR Model Predictions |
print.capthist | Print Detections |
print.mask | Print Habitat Mask |
print.secr | Print secr Object |
print.summary.capthist | Summarise Detections |
print.summary.mask | Summarise Habitat Mask |
print.summary.traps | Summarise Detector Array |
print.traps | Print Detectors |
rawdata | Demonstration Data |
rbind.capthist | Combine capthist Objects |
rbind.mask | Subset Mask Object |
rbind.popn | Combine popn Objects |
rbind.traps | Combine traps Objects |
read.captures | Read Capture Data From File |
read.mask | Read Habitat Mask From File |
read.traps | Read Detector Data From File |
reduce | Combine Columns |
reduce.capthist | Combine Occasions |
rotate | Rotate Points |
rotate.traps | Rotate Detectors |
RPSV | Home Range Statistics |
score.table | Score Test for SECR Models |
score.test | Score Test for SECR Models |
searcharea | Detector Attributes |
searcharea<- | Detector Attributes |
secr | Spatially Explicit Capture-Recapture Models |
secr density models | Density Models |
secr detection models | Models for Detection Parameters |
secr FAQ | Frequently Asked Questions, And Others |
secr models | Spatially Explicit Capture-Recapture Models |
secr.design.MS | Construct Detection Model Design Matrices and Lookups |
secr.fit | Spatially Explicit Capture-Recapture |
secr.make.newdata | Create Default Design Data |
secr.model | Spatially Explicit Capture-Recapture Models |
secr.model.density | Density Models |
secr.model.detection | Models for Detection Parameters |
secrdemo | SECR Models Fitted to Demonstration Data |
secrdemo.0 | SECR Models Fitted to Demonstration Data |
secrdemo.b | SECR Models Fitted to Demonstration Data |
secrdemo.CL | SECR Models Fitted to Demonstration Data |
session | Session Vector |
session<- | Session Vector |
shift | Shift Points |
shift.traps | Shift Detectors |
signal | Dissect Spatial Capture History Object |
signal<- | Dissect Spatial Capture History Object |
signalCH | Ovenbird Acoustic Dataset |
sim.capthist | Simulate Detection Histories |
sim.popn | Simulate 2-D Population |
sim.resight | Simulate Detection Histories |
sim.secr | Simulate From Fitted secr Model |
simulate | Simulate From Fitted secr Model |
simulate.secr | Simulate From Fitted secr Model |
split.capthist | Subset or Split capthist Object |
split.traps | Subset traps Object |
subset.capthist | Subset or Split capthist Object |
subset.mask | Subset Mask Object |
subset.traps | Subset traps Object |
summary.capthist | Summarise Detections |
summary.mask | Summarise Habitat Mask |
summary.traps | Summarise Detector Array |
transectID | Detector Attributes |
transectID<- | Detector Attributes |
transectlength | Detector Attributes |
trap | Dissect Spatial Capture History Object |
traps | Detector Array |
traps object | Detector Array |
traps<- | Detector Array |
trapXY | Demonstration Data |
trim | Drop Unwanted List Components |
trim.default | Drop Unwanted List Components |
trim.secr | Drop Unwanted List Components |
usage | Detector Usage |
usage<- | Detector Usage |
vcov.secr | Variance - Covariance Matrix of SECR Parameters |
verify | Check SECR Data |
verify.capthist | Check SECR Data |
verify.default | Check SECR Data |
verify.mask | Check SECR Data |
verify.traps | Check SECR Data |
write.capthist | Write Data to Text File |
write.traps | Write Data to Text File |
xy | Dissect Spatial Capture History Object |
xy<- | Dissect Spatial Capture History Object |