coef,lme-method |
Class "lme" |
coef,lmeLevel-method |
Class "lmeLevel" |
coef,lmList-method |
Class "lmList" |
coef,pdMat-method |
Class pdMat, positive-definite matrices |
coef,reStruct-method |
Class "reStruct" |
coef<-,lmeLevel,numeric-method |
Assign parameters |
coef<-,pdCompSymm,numeric-method |
Assign parameters |
coef<-,pdDiag,numeric-method |
Assign parameters |
coef<-,pdIdent,numeric-method |
Assign parameters |
coef<-,pdLogChol,numeric-method |
Assign parameters |
coef<-,pdNatural,numeric-method |
Assign parameters |
coef<-,reStruct,numeric-method |
Assign parameters |
coef<--methods |
Assign parameters |
coerce,lme,reStruct-method |
Coercion methods and assignments |
coerce,matrix,pdmatrix-method |
Coercion methods and assignments |
coerce,pdCompSymm,pdmatrix-method |
Coercion methods and assignments |
coerce,pdDiag,pdmatrix-method |
Coercion methods and assignments |
coerce,pdfactor,pdmatrix-method |
Coercion methods and assignments |
coerce,pdIdent,corrmatrix-method |
Coercion methods and assignments |
coerce,pdIdent,pdmatrix-method |
Coercion methods and assignments |
coerce,pdLogChol,pdmatrix-method |
Coercion methods and assignments |
coerce,pdMat,corrmatrix-method |
Coercion methods and assignments |
coerce,pdMat,matrix-method |
Coercion methods and assignments |
coerce,pdMat,pdfactor-method |
Class pdMat, positive-definite matrices |
coerce,pdmatrix,corrmatrix-method |
Coercion methods and assignments |
coerce,pdmatrix,pdfactor-method |
Coercion methods and assignments |
coerce,pdNatural,corrmatrix-method |
Coercion methods and assignments |
coerce,pdNatural,pdmatrix-method |
Coercion methods and assignments |
coerce-methods |
Coercion methods and assignments |
coerce<-,lme,reStruct-method |
Coercion methods and assignments |
coerce<-,pdDiag,pdmatrix-method |
Coercion methods and assignments |
coerce<-,pdIdent,pdmatrix-method |
Coercion methods and assignments |
coerce<-,pdLogChol,pdmatrix-method |
Coercion methods and assignments |
coerce<-,pdMat,matrix-method |
Coercion methods and assignments |
coerce<-,pdMat,pdfactor-method |
Coercion methods and assignments |
coerce<-,pdmatrix,pdfactor-method |
Coercion methods and assignments |
coerce<-,pdNatural,corrmatrix-method |
Coercion methods and assignments |
coerce<-,pdNatural,pdmatrix-method |
Coercion methods and assignments |
corFactor |
Extract the correlation factor |
corMatrix |
Generate the correlation matrix |
corMatrix,pdMat-method |
Generate the correlation matrix |
corrmatrix-class |
Class "corrmatrix" |
getCovariate |
Utilities for formulas |
getCovariateFormula |
Utilities for formulas |
getFixDF |
Internal nlme functions |
getFixDF,reStruct-method |
Class "reStruct" |
getGroups |
Utilities for formulas |
getGroups,data.frame,formula,ANY,ANY,ANY-method |
Utilities for formulas |
getGroups,reStruct,missing,ANY,missing,missing-method |
Class "reStruct" |
getGroupsFormula |
Utilities for formulas |
getGroupsFormula,ANY-method |
Utilities for formulas |
getResponse |
Utilities for formulas |
getResponse,glmm-method |
Class "glmm" |
getResponse,lme-method |
Class "lme" |
getResponse,reStruct-method |
Class "reStruct" |
getResponseFormula |
Utilities for formulas |
GLMM |
Fit Generalized Linear Mixed Models via PQL |
GLMM,ANY,ANY,missing,ANY-method |
Fit Generalized Linear Mixed Models via PQL |
GLMM,formula,ANY,ANY,formula-method |
Fit Generalized Linear Mixed Models via PQL |
GLMM,formula,ANY,ANY,list-method |
Fit Generalized Linear Mixed Models via PQL |
GLMM,formula,ANY,groupedData,missing-method |
Fit Generalized Linear Mixed Models via PQL |
GLMM,missing,ANY,groupedData,ANY-method |
Fit Generalized Linear Mixed Models via PQL |
glmm-class |
Class "glmm" |
glmmLa2LogLikComp |
Internal nlme functions |
glmmLa2RespWt |
Internal nlme functions |
glmmLa2Wt2 |
Internal nlme functions |
glmmStruct |
Create a glmm object |
glmmStruct,formula,list-method |
Create a glmm object |
groupedData-class |
Class "groupedData" |
guImmun |
Immunization in Guatemala |
guPrenat |
Prenatal care in Guatemala |
lme |
Fit linear mixed-effects models |
lme,ANY,missing,ANY-method |
Fit linear mixed-effects models |
lme,formula,ANY,formula-method |
Fit linear mixed-effects models |
lme,formula,ANY,list-method |
Fit linear mixed-effects models |
lme,formula,data.frame,list-method |
Fit linear mixed-effects models |
lme,formula,groupedData,missing-method |
Fit linear mixed-effects models |
lme,missing,groupedData,ANY-method |
Fit linear mixed-effects models |
lme-class |
Class "lme" |
lmeControl |
Control values for lme |
LMEgradient |
The gradient and Hessian in lme optimization-method |
LMEgradient,lmeLevel,matrix,missing-method |
The gradient and Hessian in lme optimization-method |
LMEgradient,lmeLevel,missing,missing-method |
The gradient and Hessian in lme optimization-method |
LMEgradient,pdDiag,matrix,numeric-method |
The gradient and Hessian in lme optimization-method |
LMEgradient,pdIdent,matrix,numeric-method |
The gradient and Hessian in lme optimization-method |
LMEgradient,pdLogChol,matrix,numeric-method |
The gradient and Hessian in lme optimization-method |
LMEgradient,pdNatural,matrix,numeric-method |
The gradient and Hessian in lme optimization-method |
LMEgradient,reStruct,missing,missing-method |
Class "reStruct" |
LMEgradient-methods |
The gradient and Hessian in lme optimization-method |
LMEhessian |
The gradient and Hessian in lme optimization-method |
LMEhessian,lmeLevel,missing,missing,missing-method |
The gradient and Hessian in lme optimization-method |
LMEhessian,pdDiag,matrix,array,numeric-method |
The gradient and Hessian in lme optimization-method |
LMEhessian,pdLogChol,matrix,array,numeric-method |
The gradient and Hessian in lme optimization-method |
LMEhessian,reStruct,missing,missing,missing-method |
The gradient and Hessian in lme optimization-method |
LMEhessian-methods |
The gradient and Hessian in lme optimization-method |
lmeLevel |
Construct an lmeLevel object |
lmeLevel,missing,missing,integer,matrix-method |
Construct an lmeLevel object |
lmeLevel,pdMat,factor,integer,matrix-method |
Construct an lmeLevel object |
lmeLevel-class |
Class "lmeLevel" |
lmeLevelList-class |
Some internal classes |
LMEoptimize<-,glmm,list-method |
Optimize linear mixed-effects |
LMEoptimize<-,reStruct,list-method |
Optimize linear mixed-effects |
lmList |
List of lm Objects with a Common Model |
lmList,formula,data.frame-method |
List of lm Objects with a Common Model |
lmList-class |
Class "lmList" |
logDet |
Logarithm of the determinant |
logDet,pdBlocked,missing-method |
Logarithm of the determinant |
logDet,pdCompSymm,missing-method |
Logarithm of the determinant |
logDet,pdDiag,missing-method |
Logarithm of the determinant |
logDet,pdIdent,missing-method |
Logarithm of the determinant |
logDet,pdLogChol,missing-method |
Logarithm of the determinant |
logDet,pdMat-method |
Logarithm of the determinant |
logDet,pdNatural,missing-method |
Logarithm of the determinant |
logDet-methods |
Logarithm of the determinant |
logLik,glmm-method |
Class "glmm" |
logLik,lme-method |
Class "lme" |
logLik,reStruct-method |
Class "reStruct" |
pdBlocked |
Class "pdBlocked", blocked pd matrices |
pdBlocked-class |
Class "pdBlocked", blocked pd matrices |
pdCompSymm |
Class "pdCompSymm" |
pdCompSymm,formula,missing,missing,missing-method |
Class "pdCompSymm" |
pdCompSymm-class |
Class "pdCompSymm" |
pdDiag |
Class "pdDiag" |
pdDiag,formula,missing,missing,missing-method |
Class "pdDiag" |
pdDiag-class |
Class "pdDiag" |
pdFactor |
Square-root factor |
pdFactor,pdMat-method |
Square-root factor |
pdfactor-class |
Factors of positive-definite matrices |
pdFactor-methods |
Square-root factor |
pdgradient |
Evaluated the pdmatrix gradient |
pdgradient,pdIdent-method |
Evaluated the pdmatrix gradient |
pdgradient,pdLogChol-method |
Evaluated the pdmatrix gradient |
pdgradient,pdMat-method |
Evaluated the pdmatrix gradient |
pdgradient-methods |
Evaluated the pdmatrix gradient |
pdgradNumeric |
Evaluate the pdmatrix gradient numerically |
pdIdent |
Class "pdIdent" |
pdIdent,formula,missing,missing,missing-method |
Class "pdIdent" |
pdIdent-class |
Class "pdIdent" |
pdLogChol |
Class "pdLogChol", positive-definite matrices |
pdLogChol,formula,missing,missing,missing-method |
Class "pdLogChol", positive-definite matrices |
pdLogChol-class |
Class "pdLogChol", positive-definite matrices |
pdMat-class |
Class pdMat, positive-definite matrices |
pdMatrix |
Return the positive-definite matrix |
pdMatrix,pdMat-method |
Return the positive-definite matrix |
pdmatrix-class |
Positive-definite matrices |
pdMatrix-methods |
Return the positive-definite matrix |
pdNatural |
Class "pdNatural", positive-definite matrices |
pdNatural,formula,missing,missing,missing-method |
Class "pdNatural", positive-definite matrices |
pdNatural,pdMat,missing,missing,missing-method |
Class "pdNatural", positive-definite matrices |
pdNatural-class |
Class "pdNatural", positive-definite matrices |
plot,lme-method |
Class "lme" |
plot,lmList-method |
Class "lmList" |
pooledSD |
Extract pooled standard deviation |
pooledSD,lmList-method |
Class "lmList" |
s3bbx |
Covariates in the Rodriguez and Goldman simulation |
s3bby |
Responses simulated by Rodriguez and Goldman |
show,glmm-method |
Class "glmm" |
show,lme-method |
Class "lme" |
show,lmList-method |
Class "lmList" |
show,pdMat-method |
Class pdMat, positive-definite matrices |
show,summary.glmm-method |
Some internal classes |
show,summary.lme-method |
Some internal classes |
show,summary.reStruct-method |
Class "summary.reStruct" |
show,VarCorr-method |
Class "VarCorr" |
solve,pdBlocked,missing-method |
Methods for Function solve |
solve,pdDiag,missing-method |
Methods for Function solve |
solve,pdIdent,missing-method |
Methods for Function solve |
solve,pdLogChol,missing-method |
Methods for Function solve |
solve,pdMat,missing-method |
Methods for Function solve |
solve,pdMat-method |
Class pdMat, positive-definite matrices |
solve,pdNatural,missing-method |
Methods for Function solve |
solve-methods |
Methods for Function solve |
splitFormula |
Utilities for formulas |
subFormula |
Utilities for formulas |
summary,glmm-method |
Class "glmm" |
summary,lme-method |
Class "lme" |
summary,pdMat-method |
Class pdMat, positive-definite matrices |
summary,reStruct-method |
Class "reStruct" |
summary.glmm-class |
Some internal classes |
summary.lme-class |
Some internal classes |
summary.pdMat-class |
Some internal classes |
summary.reStruct-class |
Class "summary.reStruct" |