permuted.index |
Internal vegan functions |
permutest.cca |
Permutation Test for Constrained Correspondence Analysis, Redundancy Analysis and Constrained Analysis of Principal Coordinates |
plot.anosim |
Analysis of Similarities |
plot.cca |
Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis |
plot.decorana |
Detrended Correspondence Analysis and Basic Reciprocal Averaging |
plot.envfit |
Fits an Environmental Vector or Factor onto an Ordination |
plot.fisherfit |
Fit Fisher's Logseries and Preston's Lognormal model to Abundance Data |
plot.prestonfit |
Fit Fisher's Logseries and Preston's Lognormal model to Abundance Data |
plot.procrustes |
Procrustes Rotation of Two Configurations |
plot.rad |
Rank - Abundance or Dominance / Diversity Models |
plot.radfit |
Rank - Abundance or Dominance / Diversity Models |
plot.radline |
Rank - Abundance or Dominance / Diversity Models |
plot.specaccum |
Species Accumulation Curves |
points.cca |
Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis |
points.ordiplot |
Alternative plot and identify Functions for Ordination |
points.radline |
Rank - Abundance or Dominance / Diversity Models |
postMDS |
Random Start and Axis Scaling for isoMDS |
prestondistr |
Fit Fisher's Logseries and Preston's Lognormal model to Abundance Data |
prestonfit |
Fit Fisher's Logseries and Preston's Lognormal model to Abundance Data |
print.anosim |
Analysis of Similarities |
print.anova.cca |
Permutation Test for Constrained Correspondence Analysis, Redundancy Analysis and Constrained Analysis of Principal Coordinates |
print.cca |
[Partial] [Constrained] Correspondence Analysis and Redundancy Analysis |
print.decorana |
Detrended Correspondence Analysis and Basic Reciprocal Averaging |
print.envfit |
Fits an Environmental Vector or Factor onto an Ordination |
print.factorfit |
Fits an Environmental Vector or Factor onto an Ordination |
print.fisherfit |
Fit Fisher's Logseries and Preston's Lognormal model to Abundance Data |
print.mantel |
Mantel Test for Two Dissimilarity Matrices |
print.permutest.cca |
Permutation Test for Constrained Correspondence Analysis, Redundancy Analysis and Constrained Analysis of Principal Coordinates |
print.prestonfit |
Fit Fisher's Logseries and Preston's Lognormal model to Abundance Data |
print.procrustes |
Procrustes Rotation of Two Configurations |
print.protest |
Procrustes Rotation of Two Configurations |
print.radfit |
Rank - Abundance or Dominance / Diversity Models |
print.radline |
Rank - Abundance or Dominance / Diversity Models |
print.specaccum |
Species Accumulation Curves |
print.summary.cca |
[Partial] [Constrained] Correspondence Analysis and Redundancy Analysis |
print.summary.decorana |
Detrended Correspondence Analysis and Basic Reciprocal Averaging |
print.summary.procrustes |
Procrustes Rotation of Two Configurations |
print.vectorfit |
Fits an Environmental Vector or Factor onto an Ordination |
procrustes |
Procrustes Rotation of Two Configurations |
protest |
Procrustes Rotation of Two Configurations |
rad.lognormal |
Rank - Abundance or Dominance / Diversity Models |
rad.preempt |
Rank - Abundance or Dominance / Diversity Models |
rad.veil |
Rank - Abundance or Dominance / Diversity Models |
rad.zipf |
Rank - Abundance or Dominance / Diversity Models |
rad.zipfbrot |
Rank - Abundance or Dominance / Diversity Models |
radfit |
Rank - Abundance or Dominance / Diversity Models |
rankindex |
Compares Dissimilarity Indices for Gradient Detection |
rarefy |
Ecological Diversity Indices and Rarefaction Species Richness |
rda |
[Partial] [Constrained] Correspondence Analysis and Redundancy Analysis |
read.cep |
Reads a CEP (Canoco) data file |
renyi |
Ecological Diversity Indices and Rarefaction Species Richness |
residuals.procrustes |
Procrustes Rotation of Two Configurations |
scores |
Get Species or Site Scores from an Ordination |
scores.cca |
Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis |
scores.decorana |
Detrended Correspondence Analysis and Basic Reciprocal Averaging |
scores.default |
Get Species or Site Scores from an Ordination |
scores.ordiplot |
Alternative plot and identify Functions for Ordination |
spantree |
Connectedness and Minimum Spanning Tree for Dissimilarities |
specaccum |
Species Accumulation Curves |
specnumber |
Ecological Diversity Indices and Rarefaction Species Richness |
specpool |
Extrapolated Species Richness in a Species Pool |
specpool2vect |
Extrapolated Species Richness in a Species Pool |
spider.cca |
Internal vegan functions |
stepacross |
Stepacross as Flexible Shortest Paths or Extended Dissimilarities |
summary.anosim |
Analysis of Similarities |
summary.cca |
[Partial] [Constrained] Correspondence Analysis and Redundancy Analysis |
summary.decorana |
Detrended Correspondence Analysis and Basic Reciprocal Averaging |
summary.procrustes |
Procrustes Rotation of Two Configurations |
summary.rda |
[Partial] [Constrained] Correspondence Analysis and Redundancy Analysis |
summary.specaccum |
Species Accumulation Curves |